WO2025223315A1 - Multi-target double-stranded rna conjugate for liver-specific delivery and pharmaceutical composition - Google Patents
Multi-target double-stranded rna conjugate for liver-specific delivery and pharmaceutical compositionInfo
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- WO2025223315A1 WO2025223315A1 PCT/CN2025/089800 CN2025089800W WO2025223315A1 WO 2025223315 A1 WO2025223315 A1 WO 2025223315A1 CN 2025089800 W CN2025089800 W CN 2025089800W WO 2025223315 A1 WO2025223315 A1 WO 2025223315A1
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- stranded rna
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- linker
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K31/00—Medicinal preparations containing organic active ingredients
- A61K31/70—Carbohydrates; Sugars; Derivatives thereof
- A61K31/7084—Compounds having two nucleosides or nucleotides, e.g. nicotinamide-adenine dinucleotide, flavine-adenine dinucleotide
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K47/00—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient
- A61K47/50—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates
- A61K47/51—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent
- A61K47/54—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an organic compound
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K47/00—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient
- A61K47/50—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates
- A61K47/51—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent
- A61K47/54—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an organic compound
- A61K47/55—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an organic compound the modifying agent being also a pharmacologically or therapeutically active agent, i.e. the entire conjugate being a codrug
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K48/00—Medicinal preparations containing genetic material which is inserted into cells of the living body to treat genetic diseases; Gene therapy
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/11—DNA or RNA fragments; Modified forms thereof; Non-coding nucleic acids having a biological activity
Definitions
- This invention belongs to the field of biomedical technology, specifically relating to a multi-target double-stranded RNA conjugate and pharmaceutical composition for liver-specific delivery.
- siRNA small interfering RNA
- siRNA drugs are a class of therapeutic agents that utilize RNA molecules to target and silence specific genes. This method is commonly used to treat a range of diseases caused by the overexpression or dysfunction of certain genes, such as genetic diseases, viral infections, and cancer.
- small interfering RNA drugs have gained widespread application due to their advantages such as high gene silencing efficiency, controllable adverse reactions, and convenient synthesis.
- the instability of siRNA sequences and the difficulty in in vivo delivery hindering their ability to reach the target site and exert their effects, have been obstacles to early siRNA drug development.
- current technologies mostly focus on delivering double-stranded siRNA to a single target site or region, lacking strategies for simultaneously and efficiently delivering siRNA to multiple targets or regions.
- the purpose of this invention is to provide a double-stranded RNA conjugate and a pharmaceutical composition capable of simultaneous multi-target liver-specific delivery.
- a first aspect of the present invention provides a multi-target double-stranded RNA conjugate, comprising a first double-stranded RNA, a second double-stranded RNA, and a linker respectively linked to the first double-stranded RNA and the second double-stranded RNA, wherein the linker comprises one or more groups as shown in general structural formula (I):
- L is absent or selected from one or more linkage combinations of the groups shown in formulas (A1)-(A14):
- R’ is H, a C1-C10 alkyl group or a C3-C8 cycloalkyl group; j1 is an integer from 1 to 20; j2 is an integer from 1 to 20;
- n is an integer between 0 and 6;
- Q is R2 and R3 are independently selected from H, C1-C20 alkyl, C1-C20 alkoxy, C2-C20 alkenyl or C2-C20 alkynyl, respectively;
- X is R4 and R5 are independently selected from H, fluorine, hydroxyl, C1-C20 alkyl, C1-C20 alkoxy, C2-C20 alkenyl, C2-C20 alkynyl, or R4 and R5 are directly linked to form a ring; p is an integer from 1 to 6.
- Z is N or CR 9 , wherein R 9 is selected from H, C1-C20 alkyl or C3-C10 cycloalkyl;
- R 1 is selected from H, fluorine, hydroxyl, cyano, C1-C20 alkyl, C1-C20 alkoxy, C2-C20 alkenyl or C2-C20 alkynyl;
- Y is absent, or is fluorine, chlorine, hydroxyl, or a delivery molecule.
- the groups shown in A1-A14 can be arbitrarily combined and connected to form L, wherein the left and right ends of the groups shown in A1-A14 can be interchanged.
- N of A7 can be connected to the group on the Y side or the group on the Z side.
- L is selected from at least two combinations of the groups shown in A1-A14.
- L is selected from one or more connection combinations of formulas A1, A2, A3, A5, A6, A7, A8, A10, A11, and A13; preferably, L is selected from at least two connection combinations of formulas A1, A2, A3, A5, A6, A7, A8, A10, A11, and A13.
- L is selected from one or more connection combinations of formulas A1, A2, A3, A5, A6, and A7; preferably, L is selected from at least two connection combinations of formulas A1, A2, A3, A5, A6, and A7.
- L is selected from one or more connection combinations of formulas A1, A2, A5, and A7; more preferably, L is selected from at least two connection combinations of formulas A1, A2, A5, and A7. More preferably, L contains formulas A1, A2, and A5 simultaneously, and the number of formulas A1, A2, and A5 is one or more, and the number of multiple formulas can be two, three, four, or five.
- R’ is hydrogen, a C1-C8 alkyl group, or a C3-C8 cycloalkyl group.
- R’ is hydrogen, a C1-C5 alkyl group, or a C4-C6 cycloalkyl group.
- R’ is hydrogen.
- j1 is an integer from 1 to 15, such as 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, or 15; j2 is an integer from 1 to 15, such as 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, or 15.
- m represents an integer from 0 to 3, such as 0, 1, 2 or 3.
- R2 and R3 are each independently selected from H, C1-C10 alkyl, C1-C10 alkoxy, C2-C10 alkenyl, or C2-C10 alkynyl.
- R2 and R3 are each independently selected from H, C1-C5 alkyl, C1-C5 alkoxy, C2-C5 alkenyl, or C2-C5 alkynyl.
- R2 and R3 are each independently selected from H, C1-C3 alkyl, C1-C3 alkoxy, C2-C4 alkenyl, or C2-C4 alkynyl.
- R2 and R3 are both H.
- X is...
- R4 and R5 are independently selected from H, fluorine, hydroxyl, C1-C10 alkyl, C1-C10 alkoxy, C2-C10 alkenyl, and C2-C10 alkynyl, respectively, or R4 and R5 are directly connected to form a three- to eight-membered ring; p is 1, 2, 3, 4, 5, or 6.
- R4 and R5 are independently selected from H, fluorine, hydroxyl, C1-C5 alkyl, C1-C5 alkoxy, C2-C5 alkenyl, and C2-C5 alkynyl, respectively, or R4 and R5 are directly connected to form a four- to six-membered carbon ring; p is an integer from 1 to 3.
- X represents
- Z is CR 9 , wherein R 9 is selected from H, C1-C10 alkyl, or C3-C8 cycloalkyl.
- R 9 is selected from H, C1-C5 alkyl, or C3-C5 cycloalkyl.
- It is a C3-C6 cycloalkyl or a C3-C8 nitrogen-containing heterocyclic group.
- It consists of four to eight nitrogen-containing saturated heterocycles.
- R1 is selected from H, fluorine, hydroxyl, cyano, C1-C10 alkyl, C1-C10 alkoxy, C2-C10 alkenyl, or C2-C10 alkynyl.
- R1 is selected from H, fluorine, hydroxyl, cyano, C1-C5 alkyl, C1-C5 alkoxy, C2-C5 alkenyl, or C2-C5 alkynyl.
- R1 is H.
- Y is absent, or is a hydroxyl group, or is... Furthermore, Y is
- the linker consists of 1 to 6 groups with the same or different structures as shown in general structural formula (I) linked by phosphate diester bonds or thiophosphate diester bonds. Further, the linker may contain 1, 2, 3, or 4 groups as shown in general structural formula (I).
- the connector has the structure described in formula (II):
- L and Y are the same as those in the general formula (I), as detailed above, and will not be repeated here; the three Ls in formula (II) may have the same or different structures; the three Ys in formula (II) may have the same or different structures.
- M is either O or S
- n represents an integer from 0 to 6; for example, 0, 1, 2, 3, 4, 5 or 6; the three values of m in equation (II) may be the same or different;
- the multi-target double-stranded RNA conjugate is selected from any of the structures shown below:
- siRNA1 is the first double-stranded RNA
- siRNA2 is the second double-stranded RNA
- the linker is connected to the positive strand of the first double-stranded RNA and the positive strand of the second double-stranded RNA, respectively.
- the linker is connected to the 3' end of the positive strand of the first double-stranded RNA and the 5' end of the positive strand of the second double-stranded RNA, respectively.
- the first double-stranded RNA and the second double-stranded RNA target different genes or different mRNA locations of the same gene.
- the 3' end and/or 5' end of the positive strand of the second double-stranded RNA is attached with reverse debased deoxyribose residues.
- reverse debased deoxyribose residue is linked to the linker or the nucleotide of the second double-stranded RNA via a phosphodiester bond or a thiophosphate diester bond.
- the 3' end and/or 5' end of the positive strand of the first double-stranded RNA are connected with reverse debased deoxyribose residues.
- the reverse debased deoxyribose residue is linked to the linker or the nucleotide of the first double-stranded RNA via a phosphodiester bond or a phosphothiodiester bond.
- the 5' end of the antisense strand of the first double-stranded RNA and/or the antisense strand of the second double-stranded RNA has a VP modification.
- the 5' end of the antisense strand of the first double-stranded RNA is modified with VP.
- the 5' end of the antisense strand of the second double-stranded RNA is modified with VP.
- the 5' ends of the antisense strands of the first double-stranded RNA and the second double-stranded RNA are modified with VP.
- multiple targets refers to two or more targets.
- the conjugate is a dual-target double-stranded RNA conjugate.
- the multi-target double-stranded RNA conjugate can be a three-target, four-target, or five-target double-stranded RNA conjugate, correspondingly including a third, fourth, or fifth double-stranded RNA.
- These double-stranded RNAs can be linked to adjacent double-stranded RNAs using the linkers described above.
- both the first double-stranded RNA and the second double-stranded RNA are siRNAs, which include a sense strand and an antisense strand.
- the antisense strands of the first double-stranded RNA and the second double-stranded RNA are separated (i.e., there is no connection between the two antisense strands; each antisense strand pairs only with its respective sense strand).
- the antisense strands of the first and second double-stranded RNAs are linked by a nucleotide or a nucleotide derivative.
- the antisense strands of the first and second double-stranded RNAs are linked by a linker; wherein the linker can be any linker in the prior art; preferably, the linker is the linker described above.
- the nucleotide or nucleotide derivative or the linker can be biodegradable so that the two antisense strands can separate after entering the body to perform their respective functions.
- each nucleotide in the first double-stranded RNA and the second double-stranded RNA is independently modified or unmodified.
- Each double-stranded RNA may employ siRNA targeting its respective site.
- At least one nucleotide in the sense strand or antisense strand of the first double-stranded RNA and the second double-stranded RNA is a modified nucleotide.
- the number of modified nucleotides in the sense strand is one, two, three, four, five, six, seven, eight, nine, ten, eleven, twelve, thirteen, fourteen, fifteen, sixteen, seventeen, eighteen, or nineteen.
- the number of modified nucleotides in the antisense strand is one, two, three, four, five, six, seven, eight, nine, ten, eleven, twelve, thirteen, fourteen, fifteen, sixteen, seventeen, eighteen, nineteen, twenty, or twenty-one.
- all nucleotides in the sense strand and the antisense strand are modified nucleotides.
- some or all of the nucleotides in siRNA are modified nucleotides, and these modifications on the nucleotide groups do not cause the siRNA to significantly weaken or lose its function of inhibiting the expression of the corresponding gene.
- At least one phosphate ester group in the sense chain or the antisense chain is a phosphate ester group with a modifying group.
- the phosphate ester group with a modifying group is a thiophosphate ester group formed by replacing at least one oxygen atom in the phosphate diester bond of the phosphate ester group with a sulfur atom.
- the 5' terminal nucleotide of the positive strand is linked to a 5' phosphate group or a 5' phosphate derivative group.
- the 5' terminal nucleotide of the antisense strand is linked to a 5' phosphate group or a 5' phosphate derivative group.
- the modified nucleotide is selected from 2'-fluoro-modified nucleotides, 2'-alkoxy-modified nucleotides, 2'-substituted alkoxy-modified nucleotides, 2'-alkyl-modified nucleotides, 2'-substituted alkyl-modified nucleotides, 2'-deoxynucleotides, 2'-amino-modified nucleotides, 2'-substituted amino-modified nucleotides, nucleotide analogs, or any combination of two or more thereof.
- 2'-fluorinated nucleotides are located at positions 7, 8, and 9 of the sense strand, with the remaining positions being non-fluorinated nucleotides, in a 5' to 3' orientation; or, 2'-fluorinated nucleotides are located at positions 7, 9, and 11 of the sense strand, with the remaining positions being non-fluorinated nucleotides; or, 2'-fluorinated nucleotides are located at positions 9, 10, and 11 of the sense strand, with the remaining positions being non-fluorinated nucleotides; or, 2'-fluorinated nucleotides are located at positions 10, 11, and 12 of the sense strand, with the remaining positions being non-fluorinated nucleotides; or, 2'-fluorinated nucleotides are located at positions 8, 9, and 10 of the sense strand, with the remaining positions being non-fluorinated nucleotides, with the remaining positions being non-fluorinated nucleot
- 2'-fluorinated nucleotides are located at positions 2, 6, 14, and 16 of the antisense strand in a 5' to 3' direction, with the remaining positions being non-fluorinated nucleotides; or, in a 5' to 3' direction, 2'-fluorinated nucleotides are located at positions 2, 14, and 16 of the antisense strand, with the remaining positions being non-fluorinated nucleotides.
- hydroxyl group at the 2' position of the ribosome of the non-fluorinated modified nucleotide is replaced by a methoxy group.
- the 5' end base of the sense strand and the 3' end base of the sense strand are respectively linked to a reverse debased deoxyribose residue containing a phosphate ester group or a thiophosphate ester group.
- the positive strand of each double-stranded RNA in a 5' to 3' orientation, contains one or more phosphate thioester groups located at the following positions:
- the positive strand of each double-stranded RNA may optionally contain one or more phosphate thioester groups located at the following positions, in a 5' to 3' orientation:
- the antisense strand in each double-stranded RNA antisense strand, in a 5' to 3' orientation, contains one or more phosphate thioester groups located at the following positions:
- any one or more nucleotides at positions 6 to 10 of the antisense strand include those as shown in the structural formula.
- the modifications shown are illustrated in the diagram, where R1 is H, OH, or CH3 , and R2 is a native nucleobase, a modified nucleobase, a universal base, or an H atom.
- the 0 to 5 nucleotides at the 3' and/or 5' ends of the first double-stranded RNA and/or the second double-stranded RNA are debased nucleotides, deoxyribonucleotides, or nucleotide analogs. More preferably, the nucleotides at the 3' and/or 5' ends of the first double-stranded RNA and/or the second double-stranded RNA are -GrGr-, -GrGrdAdT-, -dTdTdT-, -GrdAdT-, -IB-, or -s-IB-s-.
- the multi-target double-stranded RNA conjugate further includes a conjugating group covalently conjugated to the first double-stranded RNA and/or the second double-stranded RNA, wherein the conjugating group is a lipid or a receptor ligand.
- the lipid can be any lipid currently available for siRNA delivery.
- the ligand can be selected from any of the following: D-mannose, L-mannose, D-arabinose, D-xylfuranose, L-xylfuranose, D-glucose, L-glucose, D-galactose, L-galactose, ⁇ -D-mannose, ⁇ -D-mannose, ⁇ -D-mannose, ⁇ -D-mannose, ⁇ -D-glucose pyranose, ⁇ -D-glucose pyranose, ⁇ -D-glucose pyranose, ⁇ -D-glucose pyranose, ⁇ -D- Furanose, ⁇ -D-furanose, ⁇ -D-fructose, ⁇ -D-fructose pyranose, ⁇ -D-galactopyranose, ⁇ -D-galactopyranose, ⁇ -D-galactopyranose, ⁇ -D-galactopyr
- the definition of the conjugating group is the same as that of the linker.
- the number of conjugating groups is one or multiple groups connected sequentially.
- the multiple groups can be 2 to 6, for example, 2, 3, 4, 5, or 6.
- the multi-target double-stranded RNA conjugate does not contain the conjugation group; in other embodiments, the multi-target double-stranded RNA conjugate contains the conjugation group.
- the linker does not have liver-specific delivery properties
- the multi-target double-stranded RNA conjugate contains the conjugation group; while when the linker has liver-specific delivery properties, the multi-target double-stranded RNA conjugate may or may not contain the conjugation group.
- a second aspect of the present invention provides a multi-target double-stranded RNA conjugate comprising a first double-stranded RNA, a second double-stranded RNA, a linker connected to the first double-stranded RNA and the second double-stranded RNA respectively, and a reverse debased deoxyribose residue connected to the 3' end and/or 5' end of the positive strand of the second double-stranded RNA.
- the reverse debased deoxyribose residue is linked to the linker or the nucleotide of the second double-stranded RNA via a phosphodiester bond or a thiophosphate diester bond.
- the 3' end and/or 5' end of the positive strand of the first double-stranded RNA are connected with reverse debased deoxyribose residues.
- reverse debased deoxyribose residue is linked to the linker or the nucleotide of the first double-stranded RNA via a phosphodiester bond or a thiophosphate diester bond.
- the linker in this embodiment can be a linker capable of multi-target delivery in the prior art, or it can be a linker described in the multi-target double-stranded RNA provided in the first aspect above, i.e., a linker with the group shown in the general structural formula (I) and the specific structure defined under the general formula.
- the first and second double-stranded RNAs in this embodiment are also described in the first aspect above, and will not be repeated here.
- sequence of the sense strand of the first double-stranded RNA is 5’-AUAACUCACUAUAAUUACA-3’ (SEQ ID NO:1)
- sequence of the antisense strand is 5’-UGUAAUUAUAGUGAGUUAUUU-3’ (SEQ ID NO:2).
- sequence of the sense strand of the second double-stranded RNA is 5’-CAGUGUUCUUGCUCUAUAA-3’ (SEQ ID NO:3), and the sequence of the antisense strand is 5’-UUAUAGAGCAAGAACACUGUU-3’ (SEQ ID NO:4).
- sequence of the sense strand of the first double-stranded RNA is 5’-CCUGUUUUGCUUUUGUAAA-3’ (SEQ ID NO:5), and the sequence of the antisense strand is 5’-UUUACAAAAGCAAAACAGGUC-3’ (SEQ ID NO:6).
- sequence of the sense strand of the second double-stranded RNA is 5’-UAUUCUCAGUGCUCUCCUA-3’ (SEQ ID NO:7)
- sequence of the antisense strand is 5’-UAGGAGAGCACUGAGAAUACU-3’ (SEQ ID NO:8).
- the present invention also provides a pharmaceutical composition
- a pharmaceutical composition comprising the above-described multi-target double-stranded RNA conjugate, and a pharmaceutically acceptable carrier or excipient.
- the pharmaceutical composition has liver-specific delivery properties.
- the present invention also provides the use of the above-described multi-target double-stranded RNA conjugate or the above-described pharmaceutical composition in the preparation of a medicament for inhibiting the expression of multiple target genes.
- the present invention has the following advantages compared with the prior art:
- the double-stranded RNA conjugates or pharmaceutical compositions of the present invention can simultaneously deliver multiple targets to the liver specifically, improve cellular uptake efficiency and activity, and can simultaneously target multiple genes or different mRNA sites of the same gene, providing a more effective tool for regulating gene expression and expanding its application in siRNA drug development.
- Figure 1 shows the in vivo activity results of the siRNA conjugate in mice in Example 3.
- Figure 2 shows the relative residual expression level of TTR mRNA in mice for the siRNA conjugate in Example 4;
- Figure 3 shows the relative residual expression level of C5 mRNA in mice for the siRNA conjugate in Example 4.
- Figure 4 shows the in vivo activity results of the siRNA conjugate in mice in Example 5.
- Figure 5 shows the residual PCSK9 activity of the siRNA conjugate in Hep3B cells in Example 6.
- Figure 6 shows the residual APOC3 activity of the siRNA conjugate in Hep3B cells in Example 6.
- optionally substituted alkyl includes “alkyl” and “substituted alkyl” as defined below. Those skilled in the art will understand that for any group containing one or more substituents, these groups are not intended to introduce any substitution or substituent form that is spatially impractical, synthetically infeasible, and/or inherently unstable.
- alkyl refers to a straight-chain or branched alkyl group having a specified number of carbon atoms, typically from 1 to 20 carbon atoms, such as from 1 to 10 carbon atoms, or from 1 to 8 or 1 to 6 carbon atoms.
- C1-C6 alkyl groups comprise straight-chain and branched alkyl groups with 1 to 6 carbon atoms.
- alkyl residue having a specific number of carbon atoms it is intended to encompass all branched and straight-chain forms having that number of carbon atoms; thus, for example, “butyl” means including n-butyl, sec-butyl, isobutyl, and tert-butyl; “propyl” includes n-propyl and isopropyl.
- Alkylenes are subsets of alkyl groups, referring to residues that are identical to alkyl groups but have two connection sites.
- cycloalkyl refers to a non-aromatic carbon ring, typically having 3 to 7 cyclic carbon atoms. The ring may be saturated or have one or more carbon-carbon double bonds.
- cycloalkyl groups include cyclopropyl, cyclobutyl, cyclopentyl, cyclopentenyl, cyclohexyl, and cyclohexenyl, as well as bridging and cage-like cyclic groups, such as norbornane.
- uppercase letters A, U, C, G represent the base composition of nucleotides
- lowercase letter m indicates that the nucleotide adjacent to the left of letter m is a methoxy-modified nucleotide
- lowercase letter f indicates that the nucleotide adjacent to the left of letter f is a fluorinated nucleotide
- lowercase letter s indicates that the two nucleotides adjacent to the left and right of letter s are linked by a thiophosphate group
- letter combination VP indicates that the nucleotide adjacent to the right of letter combination VP is a vinyl phosphate-modified nucleotide, as shown below.
- the structure of the thiophosphate group is shown in formula (1).
- the lowercase literal d indicates that the nucleotide adjacent to the right of the letter is a deoxynucleotide, such as dA for deoxyadenosine.
- m5dC refers to 5-methyldeoxycytidine.
- the lowercase literal r indicates that the nucleotide adjacent to the left of the letter is a ribonucleotide, such as Gr for guanylic acid.
- IB refers to a reverse debased deoxyribose residue. -s-IB- or -s-IB-s- indicates that the phosphate bond in IB is a thiophosphate bond.
- nucleotide position refers to the position of the nucleotide within an oligonucleotide, counting from the nucleotide at its 5' end.
- nucleotide position 1 refers to the 5' end nucleotide of an oligonucleotide.
- double-stranded RNA refers to a polymeric form of nucleotides ranging from 2 to 2500 nucleotides.
- the double-stranded RNA has 500 to 1500 nucleotides, typically, for example, where the double-stranded RNA is used in gene therapy.
- the double-stranded RNA has 7 to 100 nucleotides.
- the double-stranded RNA has 15 to 100 nucleotides.
- the double-stranded RNA has 15 to 50 nucleotides, typically, for example, where the double-stranded RNA is a nucleic acid inhibitor molecule.
- the double-stranded RNA is a double strand having 25 to 40 nucleotides. In yet another embodiment, the double-stranded RNA has 19 to 40 or 19 to 25 nucleotides, typically, for example, where the double-stranded RNA is a double-stranded nucleic acid inhibitor molecule and forms a double helix having at least 18 to 25 base pairs.
- the double-stranded RNA contains one or more phosphorus-containing internucleotide linking groups. In other embodiments, as described herein, the internucleotide linking group is a phosphorylated amide group.
- fluorinated nucleotide refers to a nucleotide in which the hydroxyl group at the 2' position of the ribosyl group is replaced by fluorine, having the structure shown in formula (7).
- the 2'-alkyl-modified nucleotide is a methoxy-modified nucleotide (2'-OMe), as shown in formula (8).
- base represents a base, such as A, U, G, C, or T.
- non-fluorinated nucleotide refers to a nucleotide in which the hydroxyl group at the 2' position of the ribosyl group is replaced by a non-fluorinated group.
- conjugation refers to the covalent connection between two or more chemical parts, each with a specific function; correspondingly, “conjugated compound” refers to a compound formed by the covalent connection of these chemical parts.
- siRNA conjugated compound refers to a compound formed by the covalent attachment of one or more chemical parts with specific functions to siRNA.
- nucleoside monomer refers to the modified or unmodified RNA phosphoramidites (sometimes also called nucleoside phosphoramidites) used in phosphoramidite solid-phase synthesis, depending on the type and sequence of nucleotides in the siRNA or siRNA conjugate to be prepared.
- Phosphoramidite solid-phase synthesis is a method known to those skilled in the art for RNA synthesis. All nucleoside monomers used in this application are commercially available.
- protecting groups make chemical functional groups insensitive to specific reaction conditions and can be added to and removed from the functional group in the molecule without substantially impairing the rest of the molecule.
- the pharmaceutically acceptable carriers described in this disclosure can be carriers conventionally used in the field of siRNA delivery, such as, but not limited to, magnetic nanoparticles (e.g., Fe3O4 or Fe2O3 - based nanoparticles), carbon nanotubes, mesoporous silicon, calcium phosphate nanoparticles, polyethylenimine (PEI), polyamidoamine (PAMAM) dendrimer, poly(L-lysine) (PLL), chitosan, 1,2-dioleoyl-3-trimethylammonium-propane (DOTAP), poly(D&L-lactic/glycolic acid) copolymer (PLGA), and poly(2-aminoethyl ethylene phosphate).
- magnetic nanoparticles e.g., Fe3O4 or Fe2O3 - based nanoparticles
- carbon nanotubes mesoporous silicon
- calcium phosphate nanoparticles such as, but not limited to, polyethyleni
- the excipients may be one or more of phosphate, PPEEA, and poly(2-dimethylaminoethyl methacrylate) (PDMAEMA) and their derivatives.
- the excipients may be one or more of a variety of formulations or compounds conventionally used in the art.
- other pharmaceutically acceptable excipients may include at least one of pH buffers, protectants, and osmotic regulators.
- subject refers to any animal, such as a mammal or marsupial.
- Subjects of this disclosure include, but are not limited to, humans, non-human primates (e.g., rhesus monkeys or other types of macaques), mice, pigs, horses, donkeys, cattle, rabbits, sheep, rats, and any kind of poultry.
- non-human primates e.g., rhesus monkeys or other types of macaques
- mice pigs, horses, donkeys, cattle, rabbits, sheep, rats, and any kind of poultry.
- treatment refers to a method of achieving a beneficial or desired outcome, including but not limited to treatment benefits.
- a “treatment benefit” means the eradication or improvement of the underlying disorder being treated.
- a treatment benefit is achieved by eradicating or improving one or more physical symptoms associated with the underlying disorder, thereby observing improvement in the subject, even though the subject may still be suffering from the underlying disorder.
- prevention refers to methods for obtaining a beneficial or desired outcome, including but not limited to preventive benefits.
- siRNA, siRNA conjugates, or pharmaceutical compositions may be given to subjects at risk of developing a specific disease, or to subjects who report one or more physiological symptoms of a disease, even if a diagnosis of the disease may not have been made.
- the compounds represented by general formula (I) and general formula (II) and the compounds with specific structural formulas include their tautomers, racemates, enantiomers, diastereomers, mixtures thereof, etc.
- the reagents described herein can be obtained from any molecular biology reagent supplier and must meet the quality/purity standards required for molecular biology applications.
- siRNA sequences were synthesized at a 200 nmol level using solid-support-mediated phosphoramide chemistry on a Dr. Oligo48 synthesizer (Biolytic).
- the solid support was a universal solid support (Shenzhen DouDian Biotechnology).
- Nucleoside monomers, including 2'-F RNA and 2'-O-methyl RNA, were purchased from Shanghai Zhaowei or Suzhou Jima.
- the coupling time for all phosphoramides 50 mM acetonitrile solution) was 6 min.
- 5-ethylthio-1H-tetrazole (ETT) was used as the activator (0.6 M acetonitrile solution).
- the oligonucleotides were cleaved from the solid support and soaked in a 3:1 solution of 28% ammonia and ethanol at 50°C for 16 hours. The mixture was then centrifuged at high speed, and the supernatant was transferred to another centrifuge tube. After concentration and evaporation to dryness, purification was performed using C18 reversed-phase chromatography with a mobile phase of 0.1M TEAA and acetonitrile. DMTr was removed using 3% trifluoroacetic acid solution. The target oligonucleotides were collected, lyophilized, identified as the target product by LC-MS, and then quantified by UV (260 nm).
- the obtained single-stranded oligonucleotides were annealed in equimolar ratios according to the complementary pairing of two sequences.
- the resulting double-stranded siRNA was then dissolved in 1X PBS and adjusted to the required concentration for the experiment. These monomers are interconnected to form oligonucleotides via 5'-3'-phosphodiester bonds.
- L96 N-[tris(GalNAc-alkyl)-amide-decanoyl]]-4-hydroxyprolyl-(GalNAc-alkyl) was purchased from Asymchem Laboratories (Tianjin) Co., Ltd., and its structural formula is as follows:
- Nucleoside monomers were linked sequentially from 3' to 5' along the nucleotide arrangement using a solid-phase phosphorous amide method. Each linkage involved four steps: deprotection, coupling, capping, and oxidation or sulfidation. The sense and antisense chains were synthesized under the same conditions.
- Nucleoside monomers were provided in 0.05 M acetonitrile solution.
- the deprotection reaction conditions were the same for each step: 25 °C, 3 min reaction time, DCA as the deprotection reagent, and 180 ⁇ L injection volume.
- the coupling reaction conditions were identical for each step, including a temperature of 25°C and a reaction time of 3 minutes.
- the injection volume of the nucleoside monomer was 90 ⁇ L, and the injection volume of the ACT catalyst was 110 ⁇ L.
- Each capping step was performed under identical conditions, including a temperature of 25°C and a reaction time of 2 minutes.
- the capping reagent solution was a 1:1 molar ratio of CapA to CapB.
- the injection volume of the capping reagent was 180 ⁇ L.
- the oxidation reaction conditions were the same for each step, including a temperature of 25°C, a reaction time of 3 minutes, and an injection volume of 180 ⁇ L for the oxidizing reagent OXD.
- the vulcanization reaction conditions were identical for each step, including a temperature of 25°C, a reaction time of 4 minutes, and a 0.05 M PADS solution of pyridine acetonitrile as the vulcanizing agent.
- the injection volume of the vulcanizing agent was 180 ⁇ L.
- nucleic acid sequence ligated on the solid-phase support was sequentially cut, deprotected, purified, and desalted, and then freeze-dried to obtain the sense and antisense strands, wherein:
- the cleavage and deprotection conditions were as follows: The synthesized nucleotide sequence linked to the vector was added to a mixture of ammonia and ethanol in a 3:1 ratio to a volume of 0.8 mL. The reaction was carried out at 50 °C for 15 h. The remaining vector was removed by filtration, and the supernatant was concentrated to dryness under vacuum.
- the purification and desalting conditions are as follows: Desalting was performed using a C18 reversed-phase column. Specific conditions include:
- TEAA triethylamine acetate
- Activation 0.8 mL of acetonitrile was passed through each well of a 96-well plate for activation;
- Equilibration Equilibrate the 96-well plate with 0.8 mL of TEAA (pH 7.0) solution.
- the 96-well plate was washed three times with 0.8 mL of 3% trifluoroacetic acid to remove DMT, and the adsorbed layer was observed to turn orange-red.
- the detection method is as follows: The purity of the above-mentioned sense and antisense chains was detected and the molecular weight was analyzed using a WATERS ACQUITY UPLC-LTQ LCMS (COLUMN: ACQUITY UPLC BEH C18). The measured values are consistent with the theoretical values, indicating that the synthesized sense and antisense chains are conjugated with groups at the 3' and/or 5' ends.
- the annealing procedure is as follows: The synthesized sense and antisense chains are dissolved separately in water for injection to prepare solutions ranging from 0.1 mg/mL to 40 mg/mL. The solutions are then calibrated to an equimolar ratio using a concentration meter, heated at 90°C for 5 minutes, and then slowly cooled naturally to allow them to form a double-chain structure through hydrogen bonding. Samples are taken and sent for SEC purity testing of the product. The double-chain samples are then lyophilized.
- siRNA was selected for synthesis, and its in vivo activity was evaluated in mice.
- the siRNA conjugate was obtained using the solid-phase synthesis method described in Example 2, and the specific sequence and modification information are shown in Table 2.
- mice SPF-grade female C57BL/6J mice aged 6-8 weeks, weighing 20 ⁇ 2g, were selected. Before administration, the mice were weighed and observed. Animals with uniform weight and normal condition were randomly divided into groups of 4 mice each. The experimental group received the conjugate, while the solvent group received phosphate-buffered saline (PBS). The conjugate was administered subcutaneously at a dose of 1 mg/kg per mouse. Seven days after administration, the animals were euthanized, and liver tissue was harvested. The liver was dissected and placed in an RNA separator (Invitrogen, AM7021M) for subsequent RNA extraction.
- PBS phosphate-buffered saline
- the liver tissue was ground in lysis buffer (Zhiang Biotechnology, MNTR/FX96) (Shanghai Jingxin, JXFSTPRP-48L) to extract total RNA, which was reverse transcribed into cDNA (Takara, 6210B).
- lysis buffer Zhiang Biotechnology, MNTR/FX96
- JXFSTPRP-48L reverse transcribed into cDNA
- the expression levels of target genes C5 and TTR mRNA were detected by fluorescence qPCR (Vazyme, Q711).
- Reverse primer CGGCGTGTAAACAGGTTTGTC (SEQ ID NO: 10);
- Reverse primer CTTCCAGTACGATTTGGTGTCC (SEQ ID NO: 12);
- Reverse primer GATGCAGGGATGATGTTC (SEQ ID NO:14);
- the results are expressed as the residual expression level of the siRNA-administered group compared to the solvent group (the solvent group was 100%).
- the sequences of the conjugates used for injection are shown in Table 2.
- the results are shown in Figure 1. Compared with the mixture of two single-target conjugates (SD004758+SD004759), the activity of SD004519 (dTdTdT as a linker) in the dual-target molecule was the best, but it was still slightly worse than the mixture.
- siRNA was selected for conjugation synthesis, and its in vivo activity was evaluated in mice.
- the siRNA conjugate was obtained by the solid-phase synthesis method described in Example 2, and the specific sequence and modification information are shown in Table 3.
- mice SPF-grade female C57BL/6J mice aged 6-8 weeks, weighing 20 ⁇ 2g, were selected. Before administration, the mice were weighed and observed. Animals with uniform weight and normal condition were randomly divided into groups of 4. The experimental group received the conjugate, while the solvent group received phosphate-buffered saline (PBS). The conjugate was administered subcutaneously at a dose of 1 mg/kg per mouse. The animals were euthanized on days 7 and 21 post-administration, and liver tissue was harvested. The liver was dissected using standard methods and placed in an RNA separator (Invitrogen, AM7021M) for subsequent RNA extraction.
- PBS phosphate-buffered saline
- Liver tissue was ground in lysis buffer (Zhiang Bio, MNTR/FX96) (Shanghai Jingxin, JXFSTPRP-48L) to extract total RNA, which was reverse transcribed into cDNA (Takara, 6210B).
- the expression levels of target genes TTR mRNA and C5 mRNA were detected by fluorescence qPCR (Vazyme, Q711).
- Reverse primer CGGCGTGTAAACAGGTTTGTC (SEQ ID NO: 10);
- Reverse primer CTTCCAGTACGATTTGGTGTCC (SEQ ID NO: 12);
- Reverse primer GATGCAGGGATGATGTTC (SEQ ID NO:14);
- the results are expressed as the residual expression level of the siRNA-administered group compared to the solvent group (the solvent group was 100%).
- the conjugate sequences used for injection are shown in Table 3.
- the results are shown in Figures 2 and 3. Compared with the mixture of two single-target conjugates (SD004757+SD004383), the dual-target molecule SD004885 showed the best activity and was similar to the mixture.
- siRNA was selected for conjugation synthesis, and its in vivo activity was evaluated in mice.
- the siRNA conjugate was obtained by the solid-phase synthesis method described in Example 2, and the specific sequence and modification information are shown in Table 4.
- mice SPF-grade female C57BL/6J mice aged 6-8 weeks, weighing 20 ⁇ 2g, were selected. Before administration, the mice were weighed and observed. Animals with uniform weight and normal condition were randomly divided into groups of 4 mice each. The experimental group received the conjugate, while the solvent group received phosphate-buffered saline (PBS). The conjugate was administered subcutaneously at a dose of 1 mg/kg per mouse. Seven days after administration, the animals were euthanized, and liver tissue was harvested. The liver was dissected and placed in an RNA separator (Invitrogen, AM7021M) for subsequent RNA extraction.
- PBS phosphate-buffered saline
- the liver tissue was ground in lysis buffer (Zhiang Biotechnology, MNTR/FX96) (Shanghai Jingxin, JXFSTPRP-48L) to extract total RNA, which was reverse transcribed into cDNA (Takara, 6210B).
- lysis buffer Zhiang Biotechnology, MNTR/FX96
- JXFSTPRP-48L reverse transcribed into cDNA
- the expression levels of target genes TTR mRNA and C5 mRNA were detected by fluorescence qPCR (Vazyme, Q711).
- Reverse primer CGGCGTGTAAACAGGTTTGTC (SEQ ID NO: 10);
- Reverse primer CTTCCAGTACGATTTGGTGTCC (SEQ ID NO: 12);
- Reverse primer GATGCAGGGATGATGTTC (SEQ ID NO:14);
- the results are expressed as the residual expression level of the siRNA-administered group compared to the solvent group (the solvent group was 100%).
- the conjugate sequences used for injection are shown in Table 4.
- the results are shown in Figure 4. Compared with the mixture of two single-target conjugates (SD004757+SD004383), the activity of SD005429 in the dual-target molecule was the best and similar to that of the mixture.
- siRNA was selected for conjugation synthesis, and its in vitro activity was evaluated in Hep3B cells.
- the siRNA conjugate was obtained by the solid-phase synthesis method described in Example 2, and the specific sequence and modification information are shown in Table 5.
- Hep3B cells were cultured in DMEM high-glucose medium containing 10% fetal bovine serum at 37°C and 5% CO2 . 24 hours before transfection, Hep3B cells were seeded into 96-well plates at a density of 20,000 cells per well with 100 ⁇ L of medium per well.
- siRNA was transfected using Lipofectamine RNAiMAX (ThermoFisher, 13778150).
- the final siRNA transfection concentrations were 5 nM, 1.67 nM, 0.56 nM, 0.19 nM, 0.062 nM, 0.021 nM, 0.0069 nM, 0.0023 nM, 0.00076 nM, 0.00025 nM, and 0.000085 nM.
- Reverse transcription was performed using a reverse transcription kit (HiScript III All-in-one RT SuperMix Perfect for qPCR, R333-01), and quantitative real-time PCR was performed using a qPCR reaction kit (Yeasen, 11211ES08) to determine the mRNA levels of PCSK9 and APOC3.
- the mRNA levels of PCSK9 and APOC3 were corrected based on the level of the GAPDH internal reference gene.
- Reverse primer AAGTGGATCAGTCTCTGCCTCAA (SEQ ID NO: 16);
- Probe CATGATGCTGTCTGCCGAGCCG (SEQ ID NO:17);
- Reverse primer GTCCAAATCCCAGAACTCAGAGA (SEQ ID NO:19);
- Probe ACTACTGGAGCACCGTTA (SEQ ID NO:20);
- Reverse primer ACTGTGGTCATGAGTCCTTCCA (SEQ ID NO:22);
- results are expressed as the remaining percentage of PCSK9 and APOC3 mRNA expression (represented as 100%) relative to cells not treated with siRNA. The lower the remaining percentage, the higher the inhibitory activity of the siRNA. The results are shown in Figures 5 and 6 and Table 6. Based on the IC50 values, the dual-target molecule SD5518-G2760G3077 showed significantly better activity than the single-target mixture (SD004198+SD005693).
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Abstract
Description
本发明属于生物医药技术领域,具体涉及一种用于肝脏特异性递送的多靶标双链RNA偶联物及药物组合物。This invention belongs to the field of biomedical technology, specifically relating to a multi-target double-stranded RNA conjugate and pharmaceutical composition for liver-specific delivery.
siRNA(small interfering RNA)药物是一类利用RNA 分子靶向和沉默特定基因的治疗剂。该方法常用于治疗由某些基因过度表达或功能失常引起的一系列疾病,如遗传性疾病、病毒感染和癌症。小干扰RNA药物作为小核酸药物研发的热点,凭借基因沉默效率高、不良反应可控、合成方便等优点,得到了广泛应用。siRNA序列不稳定,在体内递送困难,不易到达靶点发挥作用,成为早期siRNA药物研发的阻力。目前虽然已经研发了一些递送系统,但现有技术多为进行单一靶点单一靶区的双链siRNA的递送,缺少能同时高效递送多靶点或多靶区的siRNA的递送策略。siRNA (small interfering RNA) drugs are a class of therapeutic agents that utilize RNA molecules to target and silence specific genes. This method is commonly used to treat a range of diseases caused by the overexpression or dysfunction of certain genes, such as genetic diseases, viral infections, and cancer. As a hot topic in small nucleic acid drug development, small interfering RNA drugs have gained widespread application due to their advantages such as high gene silencing efficiency, controllable adverse reactions, and convenient synthesis. However, the instability of siRNA sequences and the difficulty in in vivo delivery, hindering their ability to reach the target site and exert their effects, have been obstacles to early siRNA drug development. Although some delivery systems have been developed, current technologies mostly focus on delivering double-stranded siRNA to a single target site or region, lacking strategies for simultaneously and efficiently delivering siRNA to multiple targets or regions.
本发明的目的在于提供一种能同时进行多靶点肝脏特异性递送的双链RNA偶联物及药物组合物。The purpose of this invention is to provide a double-stranded RNA conjugate and a pharmaceutical composition capable of simultaneous multi-target liver-specific delivery.
为达到上述目的,本发明采用的技术方案是:To achieve the above objectives, the technical solution adopted by the present invention is as follows:
本发明第一方面提供了一种多靶标双链RNA偶联物,其包括第一双链RNA、第二双链RNA以及分别与所述第一双链RNA以及所述第二双链RNA相连接的连接体,其中,所述连接体包含如结构通式(Ⅰ)所示基团中的一种或多种:
A first aspect of the present invention provides a multi-target double-stranded RNA conjugate, comprising a first double-stranded RNA, a second double-stranded RNA, and a linker respectively linked to the first double-stranded RNA and the second double-stranded RNA, wherein the linker comprises one or more groups as shown in general structural formula (I):
其中,L不存在或选自如下式(A1)-(A14)所示基团中的一种或多种的连接组合:
Wherein, L is absent or selected from one or more linkage combinations of the groups shown in formulas (A1)-(A14):
其中,R’为H、C1-C10的烷基或C3-C8的环烷基;j1为1-20的整数;j2为1-20的整数;Wherein, R’ is H, a C1-C10 alkyl group or a C3-C8 cycloalkyl group; j1 is an integer from 1 to 20; j2 is an integer from 1 to 20;
m为0-6的整数;m is an integer between 0 and 6;
Q为其中R2、R3分别独立的选自H、C1-C20烷基、C1-C20烷氧基、C2-C20烯基或C2-C20炔基;Q is R2 and R3 are independently selected from H, C1-C20 alkyl, C1-C20 alkoxy, C2-C20 alkenyl or C2-C20 alkynyl, respectively;
X为其中,R4、R5分别独立地选自H、氟、羟基、C1-C20烷基、C1-C20烷氧基、C2-C20烯基、C2-C20炔基,或者R4、R5直接相连成环;p为1-6的整数;X is R4 and R5 are independently selected from H, fluorine, hydroxyl, C1-C20 alkyl, C1-C20 alkoxy, C2-C20 alkenyl, C2-C20 alkynyl, or R4 and R5 are directly linked to form a ring; p is an integer from 1 to 6.
Z为N或CR9,其中,R9选自H、C1-C20烷基或C3-C10环烷基;Z is N or CR 9 , wherein R 9 is selected from H, C1-C20 alkyl or C3-C10 cycloalkyl;
为C3-C8环烷基或C3-C8杂环基; It is a C3-C8 cycloalkyl or C3-C8 heterocyclic group;
R1选自H、氟、羟基、氰基、C1-C20烷基、C1-C20烷氧基、C2-C20烯基或C2-C20炔基;R 1 is selected from H, fluorine, hydroxyl, cyano, C1-C20 alkyl, C1-C20 alkoxy, C2-C20 alkenyl or C2-C20 alkynyl;
Y不存在,或者为氟、氯、羟基或递送分子。Y is absent, or is fluorine, chlorine, hydroxyl, or a delivery molecule.
根据一些具体实施方式,A1-A14所示基团可以任意组合连接形成所述L,其中,A1-A14所示基团的左右两端可以交换位置,以A7为例,A7的N可以与Y所在侧的基团连接,也可以与Z所在侧的基团连接。优选地,L选自A1-A14所示基团中的至少2个的连接组合。According to some specific embodiments, the groups shown in A1-A14 can be arbitrarily combined and connected to form L, wherein the left and right ends of the groups shown in A1-A14 can be interchanged. Taking A7 as an example, N of A7 can be connected to the group on the Y side or the group on the Z side. Preferably, L is selected from at least two combinations of the groups shown in A1-A14.
进一步地,L选自式A1、A2、A3、A5、A6、A7、A8、A10、A11、A13中的一种或多种的连接组合;优选地,L选自式A1、A2、A3、A5、A6、A7、A8、A10、A11、A13中的至少2个的连接组合。Further, L is selected from one or more connection combinations of formulas A1, A2, A3, A5, A6, A7, A8, A10, A11, and A13; preferably, L is selected from at least two connection combinations of formulas A1, A2, A3, A5, A6, A7, A8, A10, A11, and A13.
进一步地,L选自式A1、A2、A3、A5、A6、A7中的一种或多种的连接组合;优选地,L选自式A1、A2、A3、A5、A6、A7中的至少2个的连接组合。Further, L is selected from one or more connection combinations of formulas A1, A2, A3, A5, A6, and A7; preferably, L is selected from at least two connection combinations of formulas A1, A2, A3, A5, A6, and A7.
更进一步地,L选自式A1、A2、A5、A7中的一种或多种的连接组合;进一步优选地,L选自式A1、A2、A5、A7中的至少2个的连接组合。更为优选地,L中同时含有式A1、A2和A5,且式A1、A2和A5的个数分别为一个或多个,多个可以为两个、三个、四个或五个。Furthermore, L is selected from one or more connection combinations of formulas A1, A2, A5, and A7; more preferably, L is selected from at least two connection combinations of formulas A1, A2, A5, and A7. More preferably, L contains formulas A1, A2, and A5 simultaneously, and the number of formulas A1, A2, and A5 is one or more, and the number of multiple formulas can be two, three, four, or five.
进一步地,L不存在。Furthermore, L does not exist.
根据一些具体实施方式,R’为氢、C1-C8的烷基或C3-C8的环烷基。优选地,R’为氢、C1-C5的烷基或C4-C6的环烷基。优选地,R’为氢。According to some specific embodiments, R’ is hydrogen, a C1-C8 alkyl group, or a C3-C8 cycloalkyl group. Preferably, R’ is hydrogen, a C1-C5 alkyl group, or a C4-C6 cycloalkyl group. Preferably, R’ is hydrogen.
根据一些具体实施方式,j1为1-15的整数,例如1、2、3、4、5、6、7、8、9、10、11、12、13、14或15;j2为1-15的整数,例如1、2、3、4、5、6、7、8、9、10、11、12、13、14或15。优选地,j1为3-15的整数;j2为3-15的整数。According to some specific implementations, j1 is an integer from 1 to 15, such as 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, or 15; j2 is an integer from 1 to 15, such as 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, or 15. Preferably, j1 is an integer from 3 to 15; j2 is an integer from 3 to 15.
根据一些具体实施方式,m代表0-3的整数,例如0、1、2或3。According to some specific implementations, m represents an integer from 0 to 3, such as 0, 1, 2 or 3.
根据一些具体实施方式,R2、R3分别独立的选自H、C1-C10烷基、C1-C10烷氧基、C2-C10烯基或C2-C10炔基。优选地,R2、R3分别独立的选自H、C1-C5烷基、C1-C5烷氧基、C2-C5烯基或C2-C5炔基。优选地,R2、R3分别独立的选自H、C1-C3烷基、C1-C3烷氧基、C2-C4烯基或C2-C4炔基。优选地,R2、R3分别为H。According to some specific embodiments, R2 and R3 are each independently selected from H, C1-C10 alkyl, C1-C10 alkoxy, C2-C10 alkenyl, or C2-C10 alkynyl. Preferably, R2 and R3 are each independently selected from H, C1-C5 alkyl, C1-C5 alkoxy, C2-C5 alkenyl, or C2-C5 alkynyl. Preferably, R2 and R3 are each independently selected from H, C1-C3 alkyl, C1-C3 alkoxy, C2-C4 alkenyl, or C2-C4 alkynyl. Preferably, R2 and R3 are both H.
根据一些具体实施方式,X为其中,R4、R5分别独立地选自H、氟、羟基、C1-C10烷基、C1-C10烷氧基、C2-C10烯基、C2-C10炔基,或者R4、R5直接相连成三到八元环;p为1、2、3、4、5或6。优选地,R4、R5分别独立地选自H、氟、羟基、C1-C5烷基、C1-C5烷氧基、C2-C5烯基、C2-C5炔基,或者R4、R5直接相连成四到六元碳环;p为1~3的整数。优选地,X代表 According to some specific implementation methods, X is... Wherein, R4 and R5 are independently selected from H, fluorine, hydroxyl, C1-C10 alkyl, C1-C10 alkoxy, C2-C10 alkenyl, and C2-C10 alkynyl, respectively, or R4 and R5 are directly connected to form a three- to eight-membered ring; p is 1, 2, 3, 4, 5, or 6. Preferably, R4 and R5 are independently selected from H, fluorine, hydroxyl, C1-C5 alkyl, C1-C5 alkoxy, C2-C5 alkenyl, and C2-C5 alkynyl, respectively, or R4 and R5 are directly connected to form a four- to six-membered carbon ring; p is an integer from 1 to 3. Preferably, X represents
根据一些具体实施方式,Z为CR9,其中R9选自H、C1-C10烷基或C3-C8环烷基。优选地,R9选自H、C1-C5烷基或C3-C5环烷基。According to some specific embodiments, Z is CR 9 , wherein R 9 is selected from H, C1-C10 alkyl, or C3-C8 cycloalkyl. Preferably, R 9 is selected from H, C1-C5 alkyl, or C3-C5 cycloalkyl.
根据一些具体实施方式,为C3-C6环烷基或C3-C8的含氮杂环基。优选地,为四到八元含氮饱和杂环。According to some specific implementation methods It is a C3-C6 cycloalkyl or a C3-C8 nitrogen-containing heterocyclic group. Preferably, It consists of four to eight nitrogen-containing saturated heterocycles.
根据一些具体实施方式,R1选自H、氟、羟基、氰基、C1-C10烷基、C1-C10烷氧基、C2-C10烯基或C2-C10炔基。优选地,R1选自H、氟、羟基、氰基、C1-C5烷基、C1-C5烷氧基、C2-C5烯基或C2-C5炔基。优选地,R1为H。According to some specific embodiments, R1 is selected from H, fluorine, hydroxyl, cyano, C1-C10 alkyl, C1-C10 alkoxy, C2-C10 alkenyl, or C2-C10 alkynyl. Preferably, R1 is selected from H, fluorine, hydroxyl, cyano, C1-C5 alkyl, C1-C5 alkoxy, C2-C5 alkenyl, or C2-C5 alkynyl. Preferably, R1 is H.
根据一些具体实施方式,Y不存在,或为羟基,或为进一步地,Y为 According to some specific implementations, Y is absent, or is a hydroxyl group, or is... Furthermore, Y is
根据一些更为具体且优选实施方式,如结构通式(Ⅰ)所示基团为选自如下所示结构中的任意一种:
According to some more specific and preferred embodiments, the group represented by general structural formula (I) is selected from any of the structures shown below:
根据一些具体实施方式,所述连接体为1到6个结构相同或不同的如结构通式(Ⅰ)所示基团通过磷酸二酯键或硫代磷酸二酯键连接。进一步地,连接体中包含的如结构通式(Ⅰ)所示基团的个数可以为1个、2个、3个或4个。According to some specific embodiments, the linker consists of 1 to 6 groups with the same or different structures as shown in general structural formula (I) linked by phosphate diester bonds or thiophosphate diester bonds. Further, the linker may contain 1, 2, 3, or 4 groups as shown in general structural formula (I).
根据一些具体实施方式,所述连接体为式(II)所述结构:
According to some specific embodiments, the connector has the structure described in formula (II):
其中,L和Y的定义与结构通式(Ⅰ)中的L和Y的定义相同,详见上文,此处不再赘述;式(II)中的三个L的结构相同或不同;式(II)中的三个Y的结构相同或不同;The definitions of L and Y are the same as those in the general formula (Ⅰ), as detailed above, and will not be repeated here; the three Ls in formula (Ⅱ) may have the same or different structures; the three Ys in formula (Ⅱ) may have the same or different structures.
M为O或S;M is either O or S;
m代表0-6的整数;例如0、1、2、3、4、5或6;式(II)中的三个m的数值相同或不同;m represents an integer from 0 to 6; for example, 0, 1, 2, 3, 4, 5 or 6; the three values of m in equation (II) may be the same or different;
为四到八元含氮饱和杂环,式(II)中的三个的结构相同或不同; It is a four- to eight-membered nitrogen-containing saturated heterocycle, and the three in formula (II) The structures are the same or different;
表示基团共价键连接的位点。 This indicates the site where a group is covalently bonded.
根据一些更为具体的实施方式,所述多靶标双链RNA偶联物为选自如下所示结构中的任意一种:
According to some more specific embodiments, the multi-target double-stranded RNA conjugate is selected from any of the structures shown below:
其中,M为O或S,siRNA1为所述第一双链RNA,siRNA2为所述第二双链RNA。Where M is O or S, siRNA1 is the first double-stranded RNA, and siRNA2 is the second double-stranded RNA.
根据一些具体实施方式,所述连接体分别与所述第一双链RNA的正义链以及所述第二双链RNA的正义链相连接。According to some specific embodiments, the linker is connected to the positive strand of the first double-stranded RNA and the positive strand of the second double-stranded RNA, respectively.
进一步地,所述连接体分别与所述第一双链RNA的正义链的3’端以及所述第二双链RNA的正义链的5’端相连接。Furthermore, the linker is connected to the 3' end of the positive strand of the first double-stranded RNA and the 5' end of the positive strand of the second double-stranded RNA, respectively.
根据一些具体实施方式,所述第一双链RNA和所述第二双链RNA靶向不同基因或者靶向同一基因的不同mRNA位置。According to some specific implementations, the first double-stranded RNA and the second double-stranded RNA target different genes or different mRNA locations of the same gene.
根据一些具体实施方式,所述第二双链RNA的正义链的3’末端和/或5’末端连接有反向脱碱基脱氧核糖残基。According to some specific embodiments, the 3' end and/or 5' end of the positive strand of the second double-stranded RNA is attached with reverse debased deoxyribose residues.
进一步地,所述反向脱碱基脱氧核糖残基与所述连接体或者所述第二双链RNA的核苷酸通过磷酸二酯键或硫代磷酸二酯键连接。Furthermore, the reverse debased deoxyribose residue is linked to the linker or the nucleotide of the second double-stranded RNA via a phosphodiester bond or a thiophosphate diester bond.
进一步地,所述第一双链RNA的正义链的3’末端和/或5’末端连接有反向脱碱基脱氧核糖残基。Furthermore, the 3' end and/or 5' end of the positive strand of the first double-stranded RNA are connected with reverse debased deoxyribose residues.
再进一步地,所述反向脱碱基脱氧核糖残基与所述连接体或者所述第一双链RNA的核苷酸通过磷酸二酯键或硫代磷酸二酯键连接。根据一些具体实施方式,所述第一双链RNA的反义链和/或所述第二双链RNA的反义链的5’末端具有VP修饰。Furthermore, the reverse debased deoxyribose residue is linked to the linker or the nucleotide of the first double-stranded RNA via a phosphodiester bond or a phosphothiodiester bond. According to some specific embodiments, the 5' end of the antisense strand of the first double-stranded RNA and/or the antisense strand of the second double-stranded RNA has a VP modification.
在一种实施方式下,所述第一双链RNA的反义链的5’末端具有VP修饰。In one implementation, the 5' end of the antisense strand of the first double-stranded RNA is modified with VP.
在另一种实施方式下,所述第二双链RNA的反义链的5’末端具有VP修饰。In another embodiment, the 5' end of the antisense strand of the second double-stranded RNA is modified with VP.
在还一种实施方式下,所述第一双链RNA的反义链和所述第二双链RNA的反义链的5’末端具有VP修饰。In another embodiment, the 5' ends of the antisense strands of the first double-stranded RNA and the second double-stranded RNA are modified with VP.
其中,本文中的多靶标中的多是指两个及以上。当多靶标双链RNA偶联物中仅RNA仅包括第一双链RNA和第二双链RNA时,该偶联物为双靶标双链RNA偶联物。In this article, "multiple targets" refers to two or more targets. When the RNA in a multi-target double-stranded RNA conjugate consists only of the first and second double-stranded RNAs, the conjugate is a dual-target double-stranded RNA conjugate.
根据一些具体实施方式,所述多靶标双链RNA偶联物可以是三靶标、四靶标、五靶标等双链RNA偶联物,对应的,该多靶标双链RNA偶联物对应包括第三双链RNA、第四双链RNA或第五双链RNA等。该些双链RNA可以采用上文中记载的连接体与相邻的双链RNA相连接。According to some specific embodiments, the multi-target double-stranded RNA conjugate can be a three-target, four-target, or five-target double-stranded RNA conjugate, correspondingly including a third, fourth, or fifth double-stranded RNA. These double-stranded RNAs can be linked to adjacent double-stranded RNAs using the linkers described above.
根据一些具体实施方式,所述第一双链RNA和所述第二双链RNA均为siRNA,其包括正义链和反义链。According to some specific implementations, both the first double-stranded RNA and the second double-stranded RNA are siRNAs, which include a sense strand and an antisense strand.
根据一些具体实施方式,所述第一双链RNA的反义链与所述第二双链RNA的反义链相互分离(即两条反义链之间没有连接关系,两条反义链仅跟各自的正义链相配对)。或者所述第一双链RNA的反义链与所述第二双链RNA的反义链通过核苷酸或核苷酸衍生物相连接。或者,所述第一双链RNA的反义链与所述第二双链RNA的反义链通过Linker相连接;其中,Linker可以采用现有技术中的任意连接体;优选地,所述Linker采用上文记载的连接体。其中,核苷酸或核苷酸衍生物或Linker可以生物降解,以便两条反义链进入体内后可以分离以各自发挥作用。According to some specific embodiments, the antisense strands of the first double-stranded RNA and the second double-stranded RNA are separated (i.e., there is no connection between the two antisense strands; each antisense strand pairs only with its respective sense strand). Alternatively, the antisense strands of the first and second double-stranded RNAs are linked by a nucleotide or a nucleotide derivative. Alternatively, the antisense strands of the first and second double-stranded RNAs are linked by a linker; wherein the linker can be any linker in the prior art; preferably, the linker is the linker described above. The nucleotide or nucleotide derivative or the linker can be biodegradable so that the two antisense strands can separate after entering the body to perform their respective functions.
根据一些具体实施方式,所述第一双链RNA和所述第二双链RNA中的每个核苷酸各自独立地为修饰或未修饰的核苷酸。各个双链RNA可以采用针对各自靶点的siRNA。According to some specific embodiments, each nucleotide in the first double-stranded RNA and the second double-stranded RNA is independently modified or unmodified. Each double-stranded RNA may employ siRNA targeting its respective site.
根据某些实施方式,所述第一双链RNA和所述第二双链RNA中的正义链或反义链中的至少一个核苷酸为修饰的核苷酸。在某些实施方案中,所述正义链中的修饰核苷酸的个数为一个、两个、三个、四个、五个、六个、七个、八个、九个、十个、十一个、十二个、十三个、十四个、十五个、十六个、十七个、十八个或十九个。在某些实施方案中,所述反义链中的修饰核苷酸的个数为一个、两个、三个、四个、五个、六个、七个、八个、九个、十个、十一个、十二个、十三个、十四个、十五个、十六个、十七个、十八个、十九个、二十个或二十一个。在某些实施方案中,所述正义链和所述反义链中的全部的核苷酸为修饰的核苷酸。According to some embodiments, at least one nucleotide in the sense strand or antisense strand of the first double-stranded RNA and the second double-stranded RNA is a modified nucleotide. In some embodiments, the number of modified nucleotides in the sense strand is one, two, three, four, five, six, seven, eight, nine, ten, eleven, twelve, thirteen, fourteen, fifteen, sixteen, seventeen, eighteen, or nineteen. In some embodiments, the number of modified nucleotides in the antisense strand is one, two, three, four, five, six, seven, eight, nine, ten, eleven, twelve, thirteen, fourteen, fifteen, sixteen, seventeen, eighteen, nineteen, twenty, or twenty-one. In some embodiments, all nucleotides in the sense strand and the antisense strand are modified nucleotides.
根据一些实施方式,siRNA中的部分或全部核苷酸为修饰的核苷酸,核苷酸基团上的这些修饰不会导致siRNA抑制相应基因表达的功能明显削弱或丧失。According to some implementation methods, some or all of the nucleotides in siRNA are modified nucleotides, and these modifications on the nucleotide groups do not cause the siRNA to significantly weaken or lose its function of inhibiting the expression of the corresponding gene.
根据某些实施方式,所述正义链或所述反义链中的至少一个磷酸酯基为具有修饰基团的磷酸酯基,优选地,所述具有修饰基团的磷酸酯基为磷酸酯基中的磷酸二酯键中的至少一个氧原子被硫原子取代而形成的硫代磷酸酯基。According to certain embodiments, at least one phosphate ester group in the sense chain or the antisense chain is a phosphate ester group with a modifying group. Preferably, the phosphate ester group with a modifying group is a thiophosphate ester group formed by replacing at least one oxygen atom in the phosphate diester bond of the phosphate ester group with a sulfur atom.
根据某些实施方式,所述正义链的5’末端核苷酸连接5’磷酸基团或5’磷酸衍生基团。According to some embodiments, the 5' terminal nucleotide of the positive strand is linked to a 5' phosphate group or a 5' phosphate derivative group.
根据某些实施方式,所述反义链的5’末端核苷酸连接5’磷酸基团或5’磷酸衍生基团。According to some embodiments, the 5' terminal nucleotide of the antisense strand is linked to a 5' phosphate group or a 5' phosphate derivative group.
根据某些实施方式,所述修饰的核苷酸选自2’-氟代修饰的核苷酸,2’-烷氧基修饰的核苷酸,2’-取代的烷氧基修饰的核苷酸,2’-烷基修饰的核苷酸,2’-取代的烷基修饰的核苷酸,2’-脱氧核苷酸,2’-氨基修饰的核苷酸,2’-取代的氨基修饰的核苷酸,核苷酸类似物或其中任意两种及以上的组合。According to some embodiments, the modified nucleotide is selected from 2'-fluoro-modified nucleotides, 2'-alkoxy-modified nucleotides, 2'-substituted alkoxy-modified nucleotides, 2'-alkyl-modified nucleotides, 2'-substituted alkyl-modified nucleotides, 2'-deoxynucleotides, 2'-amino-modified nucleotides, 2'-substituted amino-modified nucleotides, nucleotide analogs, or any combination of two or more thereof.
进一步地,所述修饰的核苷酸选自2’-氟代修饰的核苷酸,2’-甲氧基修饰的核苷酸,2’-O-CH2-CH2-O-CH3修饰的核苷酸,2’-O-CH2-CH=CH2修饰的核苷酸,2’-CH2-CH2-CH=CH2修饰的核苷酸,2’-脱氧核苷酸,核苷酸类似物,反向脱碱基脱氧核糖残基或其中任意两种及以上的组合。Further, the modified nucleotide is selected from 2'-fluoromodified nucleotides, 2'-methoxymodified nucleotides, 2'-O- CH2 - CH2 -O- CH3 modified nucleotides, 2'-O- CH2 -CH= CH2 modified nucleotides, 2'-CH2- CH2 - CH= CH2 modified nucleotides, 2'-deoxynucleotides, nucleotide analogs, reverse debased deoxyribose residues, or any combination of two or more of these.
根据一些优选且具体实施方式,在每个双链RNA的正义链中,按照5’到3’的方向,2’-氟代修饰的核苷酸位于正义链的第7、8和9位,其余位置为非氟代修饰的核苷酸;或者,2’-氟代修饰的核苷酸位于正义链的第7、9和11位,其余位置为非氟代修饰的核苷酸;或者,2’-氟代修饰的核苷酸位于正义链的第9、10和11位,其余位置为非氟代修饰的核苷酸;或者,2’-氟代修饰的核苷酸位于正义链的第10、11和12位,其余位置为非氟代修饰的核苷酸;或者,2’-氟代修饰的核苷酸位于正义链的第8、9和10位,其余位置为非氟代修饰的核苷酸。According to some preferred and specific embodiments, in the sense strand of each double-stranded RNA, 2'-fluorinated nucleotides are located at positions 7, 8, and 9 of the sense strand, with the remaining positions being non-fluorinated nucleotides, in a 5' to 3' orientation; or, 2'-fluorinated nucleotides are located at positions 7, 9, and 11 of the sense strand, with the remaining positions being non-fluorinated nucleotides; or, 2'-fluorinated nucleotides are located at positions 9, 10, and 11 of the sense strand, with the remaining positions being non-fluorinated nucleotides; or, 2'-fluorinated nucleotides are located at positions 10, 11, and 12 of the sense strand, with the remaining positions being non-fluorinated nucleotides; or, 2'-fluorinated nucleotides are located at positions 8, 9, and 10 of the sense strand, with the remaining positions being non-fluorinated nucleotides.
根据另一些优选且具体实施方式,在每个双链RNA的反义链中,按照5’到3’的方向,2’-氟代修饰的核苷酸位于反义链的第2、6、14和16位,其余位置为非氟代修饰的核苷酸;或者,按照5’到3’的方向,按照5’到3’的方向,2’-氟代修饰的核苷酸位于反义链的第2、14和16位,其余位置为非氟代修饰的核苷酸。According to other preferred and specific embodiments, in the antisense strand of each double-stranded RNA, 2'-fluorinated nucleotides are located at positions 2, 6, 14, and 16 of the antisense strand in a 5' to 3' direction, with the remaining positions being non-fluorinated nucleotides; or, in a 5' to 3' direction, 2'-fluorinated nucleotides are located at positions 2, 14, and 16 of the antisense strand, with the remaining positions being non-fluorinated nucleotides.
进一步地,所述非氟代修饰的核苷酸的核糖基2’位的羟基被甲氧基取代。Furthermore, the hydroxyl group at the 2' position of the ribosome of the non-fluorinated modified nucleotide is replaced by a methoxy group.
进一步地,在每个双链RNA的正义链和反义链中,所述正义链的5’末端的碱基以及所述正义链的3’末端的碱基分别连接含有磷酸酯基或硫代磷酸酯基的反向脱碱基脱氧核糖残基。Furthermore, in the sense and antisense strands of each double-stranded RNA, the 5' end base of the sense strand and the 3' end base of the sense strand are respectively linked to a reverse debased deoxyribose residue containing a phosphate ester group or a thiophosphate ester group.
根据一些优选且具体实施方式,在每个双链RNA的正义链中,按照5’到3’的方向,所述正义链包含位于如下所示位置处的任意一处或多处的硫代磷酸酯基:According to some preferred and specific embodiments, in the positive strand of each double-stranded RNA, in a 5' to 3' orientation, the positive strand contains one or more phosphate thioester groups located at the following positions:
所述正义链5’末端起始的第1个核苷酸与第2个核苷酸之间;Between the first and second nucleotides starting at the 5' end of the positive strand;
所述正义链5’末端起始的第2个核苷酸与第3个核苷酸之间。Between the second and third nucleotides starting at the 5' end of the positive strand.
进一步地,在每个双链RNA的正义链中,按照5’到3’的方向,所述正义链还可选地包含位于如下所示位置处的一处或多处的硫代磷酸酯基:Furthermore, in the positive strand of each double-stranded RNA, the positive strand may optionally contain one or more phosphate thioester groups located at the following positions, in a 5' to 3' orientation:
所述正义链3’末端起始的第1个核苷酸与第2个核苷酸之间;Between the first and second nucleotides starting at the 3' end of the positive strand;
所述正义链3’末端起始的第2个核苷酸与第3个核苷酸之间。Between the second and third nucleotides starting at the 3' end of the positive strand.
根据一些优选且具体实施方式,在每个双链RNA的反义链中,按照5’到3’的方向,所述反义链包含位于如下所示位置处的任意一处或多处的硫代磷酸酯基:According to some preferred and specific embodiments, in each double-stranded RNA antisense strand, in a 5' to 3' orientation, the antisense strand contains one or more phosphate thioester groups located at the following positions:
所述反义链5’末端起始的第1个核苷酸与第2个核苷酸之间;Between the first and second nucleotides starting at the 5' end of the antisense strand;
所述反义链5’末端起始的第2个核苷酸与第3个核苷酸之间;Between the second and third nucleotides starting at the 5' end of the antisense strand;
所述反义链3’末端起始的第1个核苷酸与第2个核苷酸之间;Between the first and second nucleotides starting at the 3' end of the antisense strand;
所述反义链3’末端起始的第2个核苷酸与第3个核苷酸之间。Between the second and third nucleotides starting at the 3' end of the antisense strand.
根据一些优选且具体实施方式,按照5’到3’的方向,所述反义链的第6位至第10位的任意一位或多位的核苷酸包括如结构式所示的修饰,其中,R1为H、OH或CH3,R2为天然核碱基、修饰的核碱基、通用碱基或H原子。通过在反义链中增加该结构式所示修饰,可以降低siRNA的脱靶活性,并且基本不影响siRNA的在靶活性。According to some preferred and specific embodiments, in the 5' to 3' direction, any one or more nucleotides at positions 6 to 10 of the antisense strand include those as shown in the structural formula. The modifications shown are illustrated in the diagram, where R1 is H, OH, or CH3 , and R2 is a native nucleobase, a modified nucleobase, a universal base, or an H atom. By adding the modifications shown in this structural formula to the antisense strand, the off-target activity of siRNA can be reduced, with minimal impact on its on-target activity.
进一步地,如结构式所示的修饰选自以下任一结构:
Furthermore, such as structural The modifications shown are selected from any of the following structures:
根据一些具体实施方式,所述第一双链RNA和/或所述第二双链RNA的3’端和/或5’端的0~5个核苷酸为脱碱基核苷酸、脱氧核糖核苷酸或核苷酸类似物。进一步优选地,所述第一双链RNA和/或所述第二双链RNA的3’端和/或5’端的核苷酸为-GrGr-、-GrGrdAdT-、-dTdTdT-、-GrdAdT-、-IB-或-s-IB-s-。According to some specific embodiments, the 0 to 5 nucleotides at the 3' and/or 5' ends of the first double-stranded RNA and/or the second double-stranded RNA are debased nucleotides, deoxyribonucleotides, or nucleotide analogs. More preferably, the nucleotides at the 3' and/or 5' ends of the first double-stranded RNA and/or the second double-stranded RNA are -GrGr-, -GrGrdAdT-, -dTdTdT-, -GrdAdT-, -IB-, or -s-IB-s-.
根据一些具体实施方式,所述多靶标双链RNA偶联物还包括与所述第一双链RNA和/或所述第二双链RNA共价缀合的缀合基团,所述缀合基团为脂质或者受体的配体。其中,脂质可以为目前可用于siRNA递送的任意脂质。配体可以选自下述中的任意一种:D-吡喃甘露糖、L-吡喃甘露糖、D-阿拉伯糖、D-呋喃木糖、L-呋喃木糖、D-葡萄糖、L-葡萄糖、D-半乳糖、L-半乳糖、α-D-呋喃甘露糖、β-D-呋喃甘露糖、α-D-吡喃甘露糖、β-D-吡喃甘露糖、α-D-吡喃葡萄糖、β-D-吡喃葡萄糖、α-D-呋喃葡萄糖、β-D-呋喃葡萄糖、α-D-呋喃果糖、α-D-吡喃果糖、α-D-吡喃半乳糖、β-D-吡喃半乳糖、α-D-呋喃半乳糖、β-D-呋喃半乳糖、葡糖胺、唾液酸、半乳糖胺、N-乙酰基半乳糖胺、N-三氟乙酰基半乳糖胺、N-丙酰基半乳糖胺、N-正丁酰基半乳糖胺、N-异丁酰基半乳糖胺、2-氨基-3-O-[(R)-1-羧乙基]-2-脱氧-β-D-吡喃葡萄糖、2-脱氧-2-甲基氨基-L-吡喃葡萄糖、4,6-二脱氧-4-甲酰胺基-2,3-二-O-甲基-D-吡喃甘露糖、2-脱氧-2-磺氨基-D-吡喃葡萄糖、N-乙醇酰基-α-神经氨酸、5-硫代-β-D-吡喃葡萄糖、2,3,4-三-O-乙酰基-1-硫代-6-O-三苯甲基-α-D-吡喃葡萄糖苷甲酯、4-硫代-β-D-吡喃半乳糖、3,4,6,7-四-O-乙酰基-2-脱氧-1,5-二硫代-α-D-吡喃葡庚糖苷乙酯、2,5-脱水-D-阿洛糖腈、核糖、D-核糖、D-4-硫代核糖、L-核糖、L-4-硫代核糖。According to some specific embodiments, the multi-target double-stranded RNA conjugate further includes a conjugating group covalently conjugated to the first double-stranded RNA and/or the second double-stranded RNA, wherein the conjugating group is a lipid or a receptor ligand. The lipid can be any lipid currently available for siRNA delivery. The ligand can be selected from any of the following: D-mannose, L-mannose, D-arabinose, D-xylfuranose, L-xylfuranose, D-glucose, L-glucose, D-galactose, L-galactose, α-D-mannose, β-D-mannose, α-D-mannose, β-D-mannose, α-D-glucose pyranose, β-D-glucose pyranose, α-D-glucose pyranose, β-D-glucose pyranose, α-D- Furanose, β-D-furanose, α-D-fructose, α-D-fructose pyranose, α-D-galactopyranose, β-D-galactopyranose, α-D-galactopyranose, β-D-galactopyranose, glucosamine, sialic acid, galactosamine, N-acetylgalactosamine, N-trifluoroacetylgalactosamine, N-propionylgalactosamine, N-butyrylgalactosamine, N-isobutyrylgalactosamine 2-Amino-3-O-[(R)-1-carboxyethyl]-2-deoxy-β-D-glucopyranose, 2-deoxy-2-methylamino-L-glucopyranose, 4,6-dideoxy-4-carboxamido-2,3-di-O-methyl-D-mannpyranose, 2-deoxy-2-sulfonamido-D-glucopyranose, N-ethanolyl-α-neuraminic acid, 5-thio-β-D-glucopyranose, 2, 3,4-Tri-O-acetyl-1-thio-6-O-triphenylmethyl-α-D-glucopyranoside methyl ester, 4-Thio-β-D-galactopyranose, 3,4,6,7-Tetra-O-acetyl-2-deoxy-1,5-dithio-α-D-glucopyranoside ethyl ester, 2,5-dehydrated-D-alosulfonyl, ribose, D-ribose, D-4-thioribose, L-ribose, L-4-thioribose.
优选地,所述缀合基团的定义与所述连接体相同。优选地,所述缀合基团的个数为1个或依次连接的多个。其中,多个可以为2~6个,例如2个、3个、4个、5个或6个。Preferably, the definition of the conjugating group is the same as that of the linker. Preferably, the number of conjugating groups is one or multiple groups connected sequentially. The multiple groups can be 2 to 6, for example, 2, 3, 4, 5, or 6.
在一些实施方式中,所述多靶标双链RNA偶联物不含有所述缀合基团,在一些实施方式中,所述多靶标双链RNA偶联物含有所述缀合基团。特别是,当所述连接体不具有肝脏特异性递送性质时,所述多靶标双链RNA偶联物含有所述缀合基团;而当所述连接体具有肝脏特异性递送性质时,所述多靶标双链RNA偶联物可以含有所述缀合基团,也可以不含有所述缀合基团。In some embodiments, the multi-target double-stranded RNA conjugate does not contain the conjugation group; in other embodiments, the multi-target double-stranded RNA conjugate contains the conjugation group. Specifically, when the linker does not have liver-specific delivery properties, the multi-target double-stranded RNA conjugate contains the conjugation group; while when the linker has liver-specific delivery properties, the multi-target double-stranded RNA conjugate may or may not contain the conjugation group.
本发明第二方面提供一种多靶标双链RNA偶联物,其包括第一双链RNA、第二双链RNA、分别与所述第一双链RNA以及所述第二双链RNA相连接的连接体、以及连接在所述第二双链RNA的正义链的3’末端和/或5’末端的反向脱碱基脱氧核糖残基。A second aspect of the present invention provides a multi-target double-stranded RNA conjugate comprising a first double-stranded RNA, a second double-stranded RNA, a linker connected to the first double-stranded RNA and the second double-stranded RNA respectively, and a reverse debased deoxyribose residue connected to the 3' end and/or 5' end of the positive strand of the second double-stranded RNA.
根据一些具体实施方式,所述反向脱碱基脱氧核糖残基与所述连接体或者所述第二双链RNA的核苷酸通过磷酸二酯键或硫代磷酸二酯键连接。According to some specific embodiments, the reverse debased deoxyribose residue is linked to the linker or the nucleotide of the second double-stranded RNA via a phosphodiester bond or a thiophosphate diester bond.
根据一些具体实施方式,所述第一双链RNA的正义链的3’末端和/或5’末端连接有反向脱碱基脱氧核糖残基。According to some specific embodiments, the 3' end and/or 5' end of the positive strand of the first double-stranded RNA are connected with reverse debased deoxyribose residues.
进一步地,所述反向脱碱基脱氧核糖残基与所述连接体或者所述第一双链RNA的核苷酸通过磷酸二酯键或硫代磷酸二酯键连接。Furthermore, the reverse debased deoxyribose residue is linked to the linker or the nucleotide of the first double-stranded RNA via a phosphodiester bond or a thiophosphate diester bond.
该实施方式下的连接体可以为现有技术中可以进行多靶标递送的连接体,也可以是如上文第一个方面提供的多靶标双链RNA中记载的连接体,即如结构通式(Ⅰ)所示基团以及该通式下限定的具体结构所示的连接体。The linker in this embodiment can be a linker capable of multi-target delivery in the prior art, or it can be a linker described in the multi-target double-stranded RNA provided in the first aspect above, i.e., a linker with the group shown in the general structural formula (I) and the specific structure defined under the general formula.
该实施方式下的第一双链RNA和第二双链RNA也如上文第一个方面所记载,此处不再赘述。The first and second double-stranded RNAs in this embodiment are also described in the first aspect above, and will not be repeated here.
在一些实施方式下,所述第一双链RNA的正义链的序列为5’-AUAACUCACUAUAAUUACA-3’(SEQ ID NO:1),反义链的序列为5’-UGUAAUUAUAGUGAGUUAUUU-3’(SEQ ID NO:2)。In some implementations, the sequence of the sense strand of the first double-stranded RNA is 5’-AUAACUCACUAUAAUUACA-3’ (SEQ ID NO:1), and the sequence of the antisense strand is 5’-UGUAAUUAUAGUGAGUUAUUU-3’ (SEQ ID NO:2).
在一些实施方式下,所述第二双链RNA的正义链的序列为5’-CAGUGUUCUUGCUCUAUAA-3’(SEQ ID NO:3),反义链的序列为5’-UUAUAGAGCAAGAACACUGUU-3’(SEQ ID NO:4)。In some implementations, the sequence of the sense strand of the second double-stranded RNA is 5’-CAGUGUUCUUGCUCUAUAA-3’ (SEQ ID NO:3), and the sequence of the antisense strand is 5’-UUAUAGAGCAAGAACACUGUU-3’ (SEQ ID NO:4).
在一些实施方式下,所述第一双链RNA的正义链的序列为5’-CCUGUUUUGCUUUUGUAAA-3’(SEQ ID NO:5),反义链的序列为5’-UUUACAAAAGCAAAACAGGUC-3’(SEQ ID NO:6)。In some implementations, the sequence of the sense strand of the first double-stranded RNA is 5’-CCUGUUUUGCUUUUGUAAA-3’ (SEQ ID NO:5), and the sequence of the antisense strand is 5’-UUUACAAAAGCAAAACAGGUC-3’ (SEQ ID NO:6).
在一些实施方式下,所述第二双链RNA的正义链的序列为5’-UAUUCUCAGUGCUCUCCUA-3’(SEQ ID NO:7),反义链的序列为5’-UAGGAGAGCACUGAGAAUACU-3’(SEQ ID NO:8)。In some implementations, the sequence of the sense strand of the second double-stranded RNA is 5’-UAUUCUCAGUGCUCUCCUA-3’ (SEQ ID NO:7), and the sequence of the antisense strand is 5’-UAGGAGAGCACUGAGAAUACU-3’ (SEQ ID NO:8).
本发明还提供一种药物组合物,其包括上述多靶标双链RNA偶联物,以及药学上可接受的载体或辅料。The present invention also provides a pharmaceutical composition comprising the above-described multi-target double-stranded RNA conjugate, and a pharmaceutically acceptable carrier or excipient.
根据一些具体实施方式,所述药物组合物具有肝脏特异性递送特性。According to some specific embodiments, the pharmaceutical composition has liver-specific delivery properties.
本发明还提供上述多靶标双链RNA偶联物或上述药物组合物在用于制备抑制多靶标基因表达的药物中用途。The present invention also provides the use of the above-described multi-target double-stranded RNA conjugate or the above-described pharmaceutical composition in the preparation of a medicament for inhibiting the expression of multiple target genes.
由于上述技术方案运用,本发明与现有技术相比具有下列优点:Due to the application of the above-mentioned technical solution, the present invention has the following advantages compared with the prior art:
本发明的双链RNA偶联物或药物组合物能够同时进行多靶点肝脏特异性递送,能够提高细胞摄取效率和活性,可以同时靶向多个基因或靶向同一基因的不同mRNA位置,为调控基因表达提供更有效的工具,同时扩大其在siRNA药物研发上的应用。The double-stranded RNA conjugates or pharmaceutical compositions of the present invention can simultaneously deliver multiple targets to the liver specifically, improve cellular uptake efficiency and activity, and can simultaneously target multiple genes or different mRNA sites of the same gene, providing a more effective tool for regulating gene expression and expanding its application in siRNA drug development.
图1为实施例3的siRNA偶联物在小鼠中的体内活性结果图;Figure 1 shows the in vivo activity results of the siRNA conjugate in mice in Example 3.
图2为实施例4的siRNA偶联物在小鼠中的TTR mRNA相对剩余表达水平结果图;Figure 2 shows the relative residual expression level of TTR mRNA in mice for the siRNA conjugate in Example 4;
图3为实施例4的siRNA偶联物在小鼠中的C5 mRNA相对剩余表达水平结果图;Figure 3 shows the relative residual expression level of C5 mRNA in mice for the siRNA conjugate in Example 4.
图4为实施例5的siRNA偶联物在小鼠中的体内活性结果图;Figure 4 shows the in vivo activity results of the siRNA conjugate in mice in Example 5.
图5为实施例6的siRNA偶联物在Hep3B细胞中的PCSK9的剩余活性结果图;Figure 5 shows the residual PCSK9 activity of the siRNA conjugate in Hep3B cells in Example 6.
图6为实施例6的siRNA偶联物在Hep3B细胞中的APOC3的剩余活性结果图。Figure 6 shows the residual APOC3 activity of the siRNA conjugate in Hep3B cells in Example 6.
需要说明的是,除非另外定义,本申请使用的技术术语或者科学术语应当为所属领域的技术人员所理解的通常意义。下述实施例中的实验方法,如无特殊说明,均为常规方法。下述实施例中所用的药材原料、试剂材料等,如无特殊说明,均为市售购买产品。当用于本文和所附权利要求书中时,单数形式“一”、“一种”、“另一”和“所述”包括复数指代对象,除非上下文明确地另有指示。It should be noted that, unless otherwise defined, the technical or scientific terms used in this application should have the ordinary meaning understood by one of ordinary skill in the art. Unless otherwise specified, the experimental methods in the following embodiments are conventional methods. Unless otherwise specified, the medicinal materials, reagents, and other materials used in the following embodiments are commercially available products. When used herein and in the appended claims, the singular forms “a,” “an,” “another,” and “the” include the plural referents, unless the context clearly indicates otherwise.
定义definition
如本文所使用的,不介于两个字母之间或两个符号之间的短横(“-”)或者是用于指示取代基连接点的位置。As used in this article, a hyphen ("-") that is not between two letters or two symbols or It is used to indicate the location of the substituent connection point.
如本文所使用的,“任选的”或“任选地”是指其后描述的事件或状况可以发生或不发生,并且所述描述包括事件或状况发生的情况和其中不发生的情况。例如,“任选的取代的烷基”包括下文定义的“烷基”和“取代烷基”。本领域技术人员将理解的是,对于包含一个或多个取代基的任何基团,这些基团不打算引入空间上不切实际、合成上不可行和/或内在不稳定的任何取代或取代型式。As used herein, “optional” or “optionally” means that the event or condition described thereafter may or may not occur, and the description includes both the possibility that the event or condition occurs and the possibility that it does not occur. For example, “optionally substituted alkyl” includes “alkyl” and “substituted alkyl” as defined below. Those skilled in the art will understand that for any group containing one or more substituents, these groups are not intended to introduce any substitution or substituent form that is spatially impractical, synthetically infeasible, and/or inherently unstable.
如本文所使用的,“烷基”是指具有指定数量的碳原子的直链和支链,所述数量通常为1到20个碳原子,例如1至10个碳原子,如1至8个或1至6个碳原子。例如,C1-C6烷基包含1至6个碳原子的直链和支链烷基。当提及具有特定数量的碳的烷基残基时,旨在涵盖具有该数量的碳的所有支链和直链形式;因此,例如,“丁基”意味着包括正丁基、仲丁基、异丁基和叔丁基;“丙基”包括正丙基和异丙基。亚烷基是烷基的子集,指与烷基相同、但具有两个连接点的残基。As used herein, “alkyl” refers to a straight-chain or branched alkyl group having a specified number of carbon atoms, typically from 1 to 20 carbon atoms, such as from 1 to 10 carbon atoms, or from 1 to 8 or 1 to 6 carbon atoms. For example, C1-C6 alkyl groups comprise straight-chain and branched alkyl groups with 1 to 6 carbon atoms. When referring to an alkyl residue having a specific number of carbon atoms, it is intended to encompass all branched and straight-chain forms having that number of carbon atoms; thus, for example, “butyl” means including n-butyl, sec-butyl, isobutyl, and tert-butyl; “propyl” includes n-propyl and isopropyl. Alkylenes are subsets of alkyl groups, referring to residues that are identical to alkyl groups but have two connection sites.
如本文所使用的,“环烷基”是指非芳香碳环,通常具有3至7个环状碳原子。环可以是饱和的,或具有一个或多个碳-碳双键。环烷基的实例包括环丙基、环丁基、环戊基、环戊烯基、环己基和环己烯基,以及桥联和笼状环基团,如降冰片烷(norbornane)。As used herein, “cycloalkyl” refers to a non-aromatic carbon ring, typically having 3 to 7 cyclic carbon atoms. The ring may be saturated or have one or more carbon-carbon double bonds. Examples of cycloalkyl groups include cyclopropyl, cyclobutyl, cyclopentyl, cyclopentenyl, cyclohexyl, and cyclohexenyl, as well as bridging and cage-like cyclic groups, such as norbornane.
在本发明的上下文中,大写字母A、U、C、G:表示核苷酸的碱基组成;小写字母m表示该字母m左侧相邻的一个核苷酸为甲氧基修饰的核苷酸;小写字母f表示该字母f左侧相邻的一个核苷酸为氟代修饰的核苷酸;小写字母s表示与该字母s左右相邻的两个核苷酸之间为硫代磷酸酯基连接;字母组合VP表示该字母组合VP右侧相邻的一个核苷酸为乙烯基磷酸酯修饰的核苷酸,如下所示。硫代磷酸酯基的结构如式(1)所示。小写字面d表示该字母右侧相邻的一个核苷酸为脱氧核苷酸,比如dA为脱氧腺苷酸。m5dC是指5-甲基脱氧核糖胞苷。小写字面r表示该字母左侧相邻的一个核苷酸为核糖核苷酸,比如Gr是指鸟苷酸。IB是指反向脱碱基脱氧核糖残基。-s-IB-或者-s-IB-s-是指IB中的磷酸酯键为硫代磷酸酯键。
In the context of this invention, uppercase letters A, U, C, G: represent the base composition of nucleotides; lowercase letter m: indicates that the nucleotide adjacent to the left of letter m is a methoxy-modified nucleotide; lowercase letter f: indicates that the nucleotide adjacent to the left of letter f is a fluorinated nucleotide; lowercase letter s: indicates that the two nucleotides adjacent to the left and right of letter s are linked by a thiophosphate group; letter combination VP: indicates that the nucleotide adjacent to the right of letter combination VP is a vinyl phosphate-modified nucleotide, as shown below. The structure of the thiophosphate group is shown in formula (1). The lowercase literal d: indicates that the nucleotide adjacent to the right of the letter is a deoxynucleotide, such as dA for deoxyadenosine. m5dC refers to 5-methyldeoxycytidine. The lowercase literal r: indicates that the nucleotide adjacent to the left of the letter is a ribonucleotide, such as Gr for guanylic acid. IB refers to a reverse debased deoxyribose residue. -s-IB- or -s-IB-s- indicates that the phosphate bond in IB is a thiophosphate bond.
如本文所用,术语“核苷酸位置”是指如自核苷酸在5′端计数,所述核苷酸在寡核苷酸中的位置。例如,核苷酸位置1是指寡核苷酸的5′端核苷酸。As used herein, the term "nucleotide position" refers to the position of the nucleotide within an oligonucleotide, counting from the nucleotide at its 5' end. For example, nucleotide position 1 refers to the 5' end nucleotide of an oligonucleotide.
如本文所用,双链RNA是指在2至2500个核苷酸的范围内的核苷酸的聚合形式。在某些实施方案中,所述双链RNA具有500至1500个核苷酸,通常,例如,其中所述双链RNA用于基因疗法。在某些实施方案中,所述双链RNA具有7至100个核苷酸。在某些实施方案中,所述双链RNA具有15至100个核苷酸。在另一实施方案中,所述双链RNA具有15至50个核苷酸,通常,例如,其中所述双链RNA是核酸抑制剂分子。在另一实施方案中,所述双链RNA是具有25至40个核苷酸的双链。在又另一实施方案中,所述双链RNA具有19至40或19至25个核苷酸,通常,例如,其中所述双链RNA是双链核酸抑制剂分子并形成具有至少18至25个碱基对的双螺旋。通常,如本文所述,所述双链RNA含有一个或多个含磷核苷酸间连接基团。在其他实施方案中,如本文所述,所述核苷酸间连接基团是亚磷酸酰胺基团。As used herein, double-stranded RNA refers to a polymeric form of nucleotides ranging from 2 to 2500 nucleotides. In some embodiments, the double-stranded RNA has 500 to 1500 nucleotides, typically, for example, where the double-stranded RNA is used in gene therapy. In some embodiments, the double-stranded RNA has 7 to 100 nucleotides. In some embodiments, the double-stranded RNA has 15 to 100 nucleotides. In another embodiment, the double-stranded RNA has 15 to 50 nucleotides, typically, for example, where the double-stranded RNA is a nucleic acid inhibitor molecule. In another embodiment, the double-stranded RNA is a double strand having 25 to 40 nucleotides. In yet another embodiment, the double-stranded RNA has 19 to 40 or 19 to 25 nucleotides, typically, for example, where the double-stranded RNA is a double-stranded nucleic acid inhibitor molecule and forms a double helix having at least 18 to 25 base pairs. Typically, as described herein, the double-stranded RNA contains one or more phosphorus-containing internucleotide linking groups. In other embodiments, as described herein, the internucleotide linking group is a phosphorylated amide group.
如本文所用,“氟代修饰的核苷酸”是指核苷酸的核糖基2’位的羟基被氟取代形成的核苷酸,其具有以下式(7)所示的结构。在一些实施方案中,2’-烷基修饰的核苷酸为甲氧基修饰的核苷酸(2’-OMe),如式(8)所示。
As used herein, "fluorinated nucleotide" refers to a nucleotide in which the hydroxyl group at the 2' position of the ribosyl group is replaced by fluorine, having the structure shown in formula (7). In some embodiments, the 2'-alkyl-modified nucleotide is a methoxy-modified nucleotide (2'-OMe), as shown in formula (8).
其中,base表示碱基,例如A、U、G、C或T。Where base represents a base, such as A, U, G, C, or T.
如本文所用,“非氟代修饰的核苷酸”是指核苷酸的核糖基2’位的羟基被非氟基团取代形成的核苷酸。As used in this article, "non-fluorinated nucleotide" refers to a nucleotide in which the hydroxyl group at the 2' position of the ribosyl group is replaced by a non-fluorinated group.
如本文所用,“缀合”是指两个或多个各自具有特定功能的化学部分之间以共价连接的方式彼此连接;相应地,“缀合物”是指该各个化学部分之间通过共价连接而形成的化合物。进一步地,“siRNA缀合物”表示一个或多个具有特定功能的化学部分共价连接至siRNA上而形成的化合物。As used herein, "conjugation" refers to the covalent connection between two or more chemical parts, each with a specific function; correspondingly, "conjugated compound" refers to a compound formed by the covalent connection of these chemical parts. Further, "siRNA conjugated compound" refers to a compound formed by the covalent attachment of one or more chemical parts with specific functions to siRNA.
在本发明的上下文中,特别是在描述本申请的siRNA、含siRNA的组合物或siRNA缀合物的制备方法时,除非特别说明,所述核苷单体(nucleoside monomer)指,根据欲制备的siRNA或siRNA缀合物中核苷酸的种类和顺序,亚磷酰胺固相合成中使用的修饰或未修饰的核苷亚磷酰胺单体(unmodified or modified RNA phosphoramidites,有时RNA phosphoramidites也称为Nucleoside phosphoramidites)。亚磷酰胺固相合成为本领域技术人员所公知的RNA合成中所用的方法。本申请所用的核苷单体均可商购得到。In the context of this invention, particularly in describing methods for preparing siRNA, siRNA-containing compositions, or siRNA conjugates, unless otherwise specified, the term "nucleoside monomer" refers to the modified or unmodified RNA phosphoramidites (sometimes also called nucleoside phosphoramidites) used in phosphoramidite solid-phase synthesis, depending on the type and sequence of nucleotides in the siRNA or siRNA conjugate to be prepared. Phosphoramidite solid-phase synthesis is a method known to those skilled in the art for RNA synthesis. All nucleoside monomers used in this application are commercially available.
在本公开中可以使用各种羟基保护基团。一般来说,保护基团使化学官能团对特定的反应条件不敏感,并且可以在分子中的该官能团上添加以及去除,而不实质上损害分子的其余部分。Various hydroxyl protecting groups may be used in this disclosure. Generally, protecting groups make chemical functional groups insensitive to specific reaction conditions and can be added to and removed from the functional group in the molecule without substantially impairing the rest of the molecule.
本公开中所述的药学上可接受的载体可以是siRNA给药领域常规使用的载体,例如但不限于磁性纳米粒(magnetic nanoparticles,如基于Fe3O4或Fe2O3的纳米粒)、碳纳米管(carbon nanotubes)、介孔硅(mesoporous silicon)、磷酸钙纳米粒(calcium phosphate nanoparticles)、聚乙烯亚胺(polyethylenimine,PEI)、聚酰胺型树形高分子(polyamidoamine(PAMAM)dendrimer)、聚赖氨酸(poly(L-lysine),PLL)、壳聚糖(chitosan)、1,2-二油酰基-3-三甲铵丙烷(1,2-dioleoyl-3-trimethylammonium-propane,DOTAP)、聚D型或L型乳酸/羟基乙酸共聚物(poly(D&L-lactic/glycolic acid)copolymer,PLGA)、聚(氨乙基乙撑磷酸酯)(poly(2-aminoethyl ethylene phosphate),PPEEA)和聚(甲基丙烯酸-N,N-二甲氨基乙酯)(poly(2-dimethylaminoethyl methacrylate),PDMAEMA)以及它们的衍生物中的一种或多种。辅料可以为本领域常规采用的各种制剂或化合物的一种或多种。例如,所述药学上可接受的其它辅料可以包括pH缓冲液、保护剂和渗透压调节剂中的至少一种。The pharmaceutically acceptable carriers described in this disclosure can be carriers conventionally used in the field of siRNA delivery, such as, but not limited to, magnetic nanoparticles (e.g., Fe3O4 or Fe2O3 - based nanoparticles), carbon nanotubes, mesoporous silicon, calcium phosphate nanoparticles, polyethylenimine (PEI), polyamidoamine (PAMAM) dendrimer, poly(L-lysine) (PLL), chitosan, 1,2-dioleoyl-3-trimethylammonium-propane (DOTAP), poly(D&L-lactic/glycolic acid) copolymer (PLGA), and poly(2-aminoethyl ethylene phosphate). The excipients may be one or more of phosphate, PPEEA, and poly(2-dimethylaminoethyl methacrylate) (PDMAEMA) and their derivatives. The excipients may be one or more of a variety of formulations or compounds conventionally used in the art. For example, other pharmaceutically acceptable excipients may include at least one of pH buffers, protectants, and osmotic regulators.
“受试者”一词,如本文所使用的,指任何动物,例如哺乳动物或有袋动物。本公开的受试者包括但不限于人类、非人灵长类(例如,恒河猴或其他类型的猕猴)、小鼠、猪、马、驴、牛、兔、绵羊、大鼠和任何种类的家禽。The term “subject” as used herein refers to any animal, such as a mammal or marsupial. Subjects of this disclosure include, but are not limited to, humans, non-human primates (e.g., rhesus monkeys or other types of macaques), mice, pigs, horses, donkeys, cattle, rabbits, sheep, rats, and any kind of poultry.
如本文所使用的,“治疗”指的是获得有益的或期望的结果的方法,包括但不限于治疗益处。“治疗益处”意味着根除或改善被治疗的潜在障碍。此外,治疗益处通过根除或改善与潜在障碍相关的一个或多个生理症状,从而在受试者中观察到改善而获得,尽管受试者可能仍然受到潜在障碍的折磨。As used herein, “treatment” refers to a method of achieving a beneficial or desired outcome, including but not limited to treatment benefits. A “treatment benefit” means the eradication or improvement of the underlying disorder being treated. Furthermore, a treatment benefit is achieved by eradicating or improving one or more physical symptoms associated with the underlying disorder, thereby observing improvement in the subject, even though the subject may still be suffering from the underlying disorder.
如本文所使用的“预防”指获得有益或期望的结果的方法,包括但不限于预防性益处。为了获得“预防性益处”,可将siRNA、siRNA缀合物或药物组合物给予有罹患特定疾病风险的受试者,或给予报告疾病的一种或多种生理症状的受试者,即便可能该疾病的诊断尚未作出。As used herein, “prevention” refers to methods for obtaining a beneficial or desired outcome, including but not limited to preventive benefits. To obtain a “preventive benefit,” siRNA, siRNA conjugates, or pharmaceutical compositions may be given to subjects at risk of developing a specific disease, or to subjects who report one or more physiological symptoms of a disease, even if a diagnosis of the disease may not have been made.
在本发明中,通式(I)和通式(II)所示的化合物以及具体结构式的化合物包括其互变异构体、外消旋体、对映异构体、非对映异构体、其混合物等形式。In this invention, the compounds represented by general formula (I) and general formula (II) and the compounds with specific structural formulas include their tautomers, racemates, enantiomers, diastereomers, mixtures thereof, etc.
下面结合具体的实施例对本发明提供的技术方案做进一步的描述。下述实施例仅用于对本发明进行说明,并不会对本发明的保护范围进行限制。The technical solution provided by the present invention will be further described below with reference to specific embodiments. The following embodiments are for illustrative purposes only and do not limit the scope of protection of the present invention.
实施例1 siRNA的合成Example 1: Synthesis of siRNA
本文中,若未给出实际的试剂来源,则该类试剂可以自任意分子生物学试剂的供应商获得;且具备满足用于分子生物学应用的质量/纯度标准。Unless otherwise specified, the reagents described herein can be obtained from any molecular biology reagent supplier and must meet the quality/purity standards required for molecular biology applications.
使用固体支撑物介导的亚磷酰胺化学于Dr.Oligo48合成器(Biolytic)上以200纳摩尔(nmol)规格合成siRNA序列。该固体支撑物是通用固体支撑物(深圳逗点生物)。核苷单体原料2’-F RNA、2’-O-甲基RNA等核苷亚磷酰胺单体购自上海兆维或苏州吉玛。全部亚磷酰胺(50mM乙腈溶液)的偶合时间是6分钟(min),采用5-乙基硫-1H-四唑(ETT)作为活化剂(0.6M乙腈溶液),使用0.22M的PADS溶于1:1体积比的乙腈和三甲基吡啶(苏州柯乐玛)溶液作为硫化试剂,硫化反应时间是3分钟(min),使用碘吡啶/水溶液(柯乐玛)作为氧化剂,氧化反应时间2分钟(min)。siRNA sequences were synthesized at a 200 nmol level using solid-support-mediated phosphoramide chemistry on a Dr. Oligo48 synthesizer (Biolytic). The solid support was a universal solid support (Shenzhen DouDian Biotechnology). Nucleoside monomers, including 2'-F RNA and 2'-O-methyl RNA, were purchased from Shanghai Zhaowei or Suzhou Jima. The coupling time for all phosphoramides (50 mM acetonitrile solution) was 6 min. 5-ethylthio-1H-tetrazole (ETT) was used as the activator (0.6 M acetonitrile solution). 0.22 M PADS dissolved in a 1:1 volume ratio of acetonitrile and trimethylpyridine (Suzhou Kelama) was used as the sulfidation agent, with a sulfidation reaction time of 3 min. Iodopyridine/aqueous solution (Kelama) was used as the oxidant, with an oxidation reaction time of 2 min.
固相合成完成后,寡核糖核苷酸自该固体支撑物裂解,采用3:1的28%氨水和乙醇溶液在50℃条件下浸泡16小时。然后高速离心,将上清液转移到另一个离心管中,浓缩蒸发干后,使用C18反向色谱纯化,流动相为0.1M TEAA和乙腈,并使用3%三氟乙酸溶液脱出DMTr。目标寡核苷酸收集后冻干,并经LC-MS鉴定为目标产物,再经过UV(260nm)定量。After solid-phase synthesis, the oligonucleotides were cleaved from the solid support and soaked in a 3:1 solution of 28% ammonia and ethanol at 50°C for 16 hours. The mixture was then centrifuged at high speed, and the supernatant was transferred to another centrifuge tube. After concentration and evaporation to dryness, purification was performed using C18 reversed-phase chromatography with a mobile phase of 0.1M TEAA and acetonitrile. DMTr was removed using 3% trifluoroacetic acid solution. The target oligonucleotides were collected, lyophilized, identified as the target product by LC-MS, and then quantified by UV (260 nm).
所得到的单链寡核苷酸,根据等摩尔比,按照互补配对的两条序列,进行退火,最后所得到的双链siRNA溶于1X PBS中,并调整至实验所需浓度。这些单体通过5’-3’-磷酸二酯键相互连接成寡核苷酸。The obtained single-stranded oligonucleotides were annealed in equimolar ratios according to the complementary pairing of two sequences. The resulting double-stranded siRNA was then dissolved in 1X PBS and adjusted to the required concentration for the experiment. These monomers are interconnected to form oligonucleotides via 5'-3'-phosphodiester bonds.
实施例2 siRNA偶联物的制备Example 2 Preparation of siRNA conjugates
一、GalNAc靶头或连接体1. GalNAc target or connector
1、L96(N-[三(GalNAc-烷基)-酰胺癸酰基]]-4-羟基脯氨醇-(GalNAc-烷基))购自凯莱英医药集团(天津)股份有限公司,其结构式如下:
1. L96 (N-[tris(GalNAc-alkyl)-amide-decanoyl]]-4-hydroxyprolyl-(GalNAc-alkyl)) was purchased from Asymchem Laboratories (Tianjin) Co., Ltd., and its structural formula is as follows:
2、SA51的前体化合物I-1-7,其合成方法参见申请号为2024100522838的发明专利,其结构式为 2. The precursor compound I-1-7 of SA51, the synthesis method of which can be found in the invention patent application number 2024100522838, has the following structural formula:
3、前体化合物SA102的合成方法参见申请号为2024100522838的发明专利,其结构式为 3. The synthesis method of the precursor compound SA102 is described in invention patent application number 2024100522838, and its structural formula is as follows:
二、siRNA偶联物制备II. Preparation of siRNA conjugates
通过固相亚磷酰胺法,按照核苷酸排布顺序自3’-5’方向逐一连接核苷单体。每连接一个核苷单体都包括脱保护、偶联、盖帽、氧化或硫化四步反应。正义链和反义链采用相同的合成条件。Nucleoside monomers were linked sequentially from 3' to 5' along the nucleotide arrangement using a solid-phase phosphorous amide method. Each linkage involved four steps: deprotection, coupling, capping, and oxidation or sulfidation. The sense and antisense chains were synthesized under the same conditions.
仪器设备型号:Biolytic Dr.Oligo 48固相合成仪,逗点生物Embed CPG Frits通用合成柱DS0200,逗点生物96孔板脱盐柱DC189650(80mg)。表1为合成siRNA缀合物使用的试剂。Instruments and equipment used: Biolytic Dr. Oligo 48 solid-phase synthesizer, Comma BioEmbedded CPG Frits universal synthesis column DS0200, Comma BioEmbedded 96-well plate desalting column DC189650 (80mg). Table 1 lists the reagents used to synthesize siRNA conjugates.
表1
Table 1
合成条件如下:The synthesis conditions are as follows:
核苷单体以0.05M浓度的乙腈溶液提供,每一步的脱保护反应的条件相同,即温度为25℃,反应时间为3分钟,脱保护试剂为DCA,进样体积180μL。Nucleoside monomers were provided in 0.05 M acetonitrile solution. The deprotection reaction conditions were the same for each step: 25 °C, 3 min reaction time, DCA as the deprotection reagent, and 180 μL injection volume.
每一步偶联反应条件均相同,包括温度为25℃,反应时间为3分钟。核苷单体进样体积90μL,催化剂ACT进样体积110μL。The coupling reaction conditions were identical for each step, including a temperature of 25°C and a reaction time of 3 minutes. The injection volume of the nucleoside monomer was 90 μL, and the injection volume of the ACT catalyst was 110 μL.
每一步盖帽条件均相同,包括温度为25℃,反应时间为2分钟。盖帽试剂溶液的摩尔比为1:1的CapA和CapB的混合溶液。盖帽试剂进样体积180μL。Each capping step was performed under identical conditions, including a temperature of 25°C and a reaction time of 2 minutes. The capping reagent solution was a 1:1 molar ratio of CapA to CapB. The injection volume of the capping reagent was 180 μL.
每一步氧化反应条件均相同,包括温度为25℃,反应时间为3分钟,氧化试剂OXD进样体积为180μL。The oxidation reaction conditions were the same for each step, including a temperature of 25°C, a reaction time of 3 minutes, and an injection volume of 180 μL for the oxidizing reagent OXD.
每一步硫化反应条件均相同,包括温度为25℃,反应时间为4分钟,硫化试剂为0.05M PADS的吡啶乙腈溶液。硫化试剂进样体积180μL。The vulcanization reaction conditions were identical for each step, including a temperature of 25°C, a reaction time of 4 minutes, and a 0.05 M PADS solution of pyridine acetonitrile as the vulcanizing agent. The injection volume of the vulcanizing agent was 180 μL.
待最后一个核苷单体连接完成后,依次对固相载体上连接的核酸序列进行切割、脱保护、纯化、脱盐,随后冻干获得正义链和反义链,其中:After the last nucleoside monomer was ligated, the nucleic acid sequence ligated on the solid-phase support was sequentially cut, deprotected, purified, and desalted, and then freeze-dried to obtain the sense and antisense strands, wherein:
切割和脱保护条件如下:将合成的连接有载体的核苷酸序列加入氨水:乙醇=3:1的混合溶液至体积为0.8mL。在50℃反应15h,过滤除去剩余载体,将上清液真空浓缩至干。The cleavage and deprotection conditions were as follows: The synthesized nucleotide sequence linked to the vector was added to a mixture of ammonia and ethanol in a 3:1 ratio to a volume of 0.8 mL. The reaction was carried out at 50 °C for 15 h. The remaining vector was removed by filtration, and the supernatant was concentrated to dryness under vacuum.
纯化和脱盐条件如下:利用C18反相色谱柱进行脱盐。具体条件包括:The purification and desalting conditions are as follows: Desalting was performed using a C18 reversed-phase column. Specific conditions include:
(1)样品的准备(1) Sample preparation
向寡核苷酸样品中加入0.1M的TEAA(三乙胺醋酸盐)至体积为0.8mL。Add 0.1M TEAA (triethylamine acetate) to the oligonucleotide sample to a volume of 0.8mL.
(2)96孔板的活化(2) Activation of 96-well plate
活化:0.8mL乙腈通过96孔板的每个孔中进行活化;Activation: 0.8 mL of acetonitrile was passed through each well of a 96-well plate for activation;
平衡:用0.8mL TEAA(pH 7.0)溶液进行96孔板的平衡。Equilibration: Equilibrate the 96-well plate with 0.8 mL of TEAA (pH 7.0) solution.
(3)纯化过程依次按照如下操作:(3) The purification process shall be carried out in the following order:
将0.8mL包含寡核苷酸的溶液通过脱盐柱;Pass 0.8 mL of a solution containing oligonucleotides through a desalting column;
用0.8mL 6.5%氨水洗涤96孔板2次,去除失败的序列;Wash the 96-well plate twice with 0.8 mL of 6.5% ammonia to remove failed sequences;
用0.8mL去离子水冲洗96孔板2次,去除盐分;Rinse the 96-well plate twice with 0.8 mL of deionized water to remove salts;
用0.8mL 3%三氟乙酸冲洗96孔板3次,去除DMT,观察到吸附层变橙红色;The 96-well plate was washed three times with 0.8 mL of 3% trifluoroacetic acid to remove DMT, and the adsorbed layer was observed to turn orange-red.
用0.8mL 0.1M TEAA冲洗96孔板;Rinse the 96-well plate with 0.8 mL of 0.1 M TEAA;
用0.8mL去离子水冲洗96孔板2次,去除三氟乙酸和残余的盐分;Rinse the 96-well plate twice with 0.8 mL of deionized water to remove trifluoroacetic acid and residual salts;
用0.6mL 20%乙腈进行洗脱,并收集冻干。Elute with 0.6 mL of 20% acetonitrile and collect and freeze-dry.
检测方法如下:使用WATERS ACQUITY UPLC-LTQ LCMS(COLUMN:ACQUITY UPLC BEH C18)检测上述正义链和反义链纯度并分析分子量。实测值与理论值相符,表明所合成的是3’端和/或5’端缀合了基团的正义链以及反义链。The detection method is as follows: The purity of the above-mentioned sense and antisense chains was detected and the molecular weight was analyzed using a WATERS ACQUITY UPLC-LTQ LCMS (COLUMN: ACQUITY UPLC BEH C18). The measured values are consistent with the theoretical values, indicating that the synthesized sense and antisense chains are conjugated with groups at the 3' and/or 5' ends.
退火操作如下:将合成获得的正义链和反义链分别溶于注射用水中,配制0.1mg/mL-40mg/mL的溶液,用浓度仪标定等摩尔比混合,90℃加热5分钟,再缓慢自然降温,使它们通过氢键形成双链结构,取样送检测产品的SEC纯度。将双链样品冻干。The annealing procedure is as follows: The synthesized sense and antisense chains are dissolved separately in water for injection to prepare solutions ranging from 0.1 mg/mL to 40 mg/mL. The solutions are then calibrated to an equimolar ratio using a concentration meter, heated at 90°C for 5 minutes, and then slowly cooled naturally to allow them to form a double-chain structure through hydrogen bonding. Samples are taken and sent for SEC purity testing of the product. The double-chain samples are then lyophilized.
实施例3不同偶联物在小鼠体内活性Example 3: Activity of different conjugates in mice
在本实施例中,选取siRNA进行合成,在小鼠中测评体内活性。siRNA偶联物通过实施例2的固相合成方法获得,具体序列及修饰信息见表2。In this embodiment, siRNA was selected for synthesis, and its in vivo activity was evaluated in mice. The siRNA conjugate was obtained using the solid-phase synthesis method described in Example 2, and the specific sequence and modification information are shown in Table 2.
表2
Table 2
实验方法:Experimental methods:
选择6-8周龄的SPF级雌性C57BL/6J小鼠,小鼠的体重为20±2g。给药前对上述小鼠称重并观察状态,选取体重均一、状态无异常的动物进行随机分组,每组4只,其中实验组小鼠给予偶联物,溶媒组小鼠给予磷酸盐缓冲盐水(PBS),按照每只小鼠给予1mg/kg偶联物的剂量进行皮下给药。给药后7天,动物安乐死,取肝组织,按照常规方法,将肝脏切块并置于RNALater(Invitrogen,AM7021M)中,用于后续RNA提取。将肝脏组织放入裂解液(志昂生物,MNTR/FX96)中研磨(上海净信,JXFSTPRP-48L)提取总RNA,反转录为cDNA(Takara,6210B),通过荧光法qPCR(Vazyme,Q711)检测靶基因C5和TTR mRNA的表达水平。SPF-grade female C57BL/6J mice aged 6-8 weeks, weighing 20±2g, were selected. Before administration, the mice were weighed and observed. Animals with uniform weight and normal condition were randomly divided into groups of 4 mice each. The experimental group received the conjugate, while the solvent group received phosphate-buffered saline (PBS). The conjugate was administered subcutaneously at a dose of 1 mg/kg per mouse. Seven days after administration, the animals were euthanized, and liver tissue was harvested. The liver was dissected and placed in an RNA separator (Invitrogen, AM7021M) for subsequent RNA extraction. The liver tissue was ground in lysis buffer (Zhiang Biotechnology, MNTR/FX96) (Shanghai Jingxin, JXFSTPRP-48L) to extract total RNA, which was reverse transcribed into cDNA (Takara, 6210B). The expression levels of target genes C5 and TTR mRNA were detected by fluorescence qPCR (Vazyme, Q711).
目的基因C5引物:C5 primer for target gene:
正向引物:CCAGCCCAATCAAGTTCCTAGAG(SEQ ID NO:9);Forward primer: CCAGCCCAATCAAGTTCCTAGAG (SEQ ID NO: 9);
反向引物:CGGCGTGTAAACAGGTTTGTC(SEQ ID NO:10);Reverse primer: CGGCGTGTAAACAGGTTTGTC (SEQ ID NO: 10);
目的基因TTR引物:Target gene TTR primers:
正向引物:CTGCTGTAGACGTGGCTGTAA(SEQ ID NO:11);Forward primer: CTGCTGTAGACGTGGCTGTAA (SEQ ID NO:11);
反向引物:CTTCCAGTACGATTTGGTGTCC(SEQ ID NO:12);Reverse primer: CTTCCAGTACGATTTGGTGTCC (SEQ ID NO: 12);
内参基因GAPDH引物:GAPDH primers for internal reference gene:
正向引物:TGCACCACCAACTGCTTAG(SEQ ID NO:13);Forward primer: TGCACCACCAACTGCTTAG (SEQ ID NO:13);
反向引物:GATGCAGGGATGATGTTC(SEQ ID NO:14);Reverse primer: GATGCAGGGATGATGTTC (SEQ ID NO:14);
结果以siRNA给药组相比于溶媒组(溶媒组为100%)的剩余表达水平表示,用于注射的偶联物序列见表2,结果如图1,与两个单靶的缀合物混合物(SD004758+SD004759)相比,双靶分子中SD004519(dTdTdT作为linker)的活性最好,但与混合物相比,仍然要差一点。The results are expressed as the residual expression level of the siRNA-administered group compared to the solvent group (the solvent group was 100%). The sequences of the conjugates used for injection are shown in Table 2. The results are shown in Figure 1. Compared with the mixture of two single-target conjugates (SD004758+SD004759), the activity of SD004519 (dTdTdT as a linker) in the dual-target molecule was the best, but it was still slightly worse than the mixture.
实施例4不同设计的双靶分子在小鼠体内活性Example 4: Activity of different designed dual-target molecules in mice
在本实施例中,选取siRNA进行缀合合成,在小鼠中测评体内活性。siRNA偶联物通过实施例2的固相合成方法获得,具体序列及修饰信息见表3。In this embodiment, siRNA was selected for conjugation synthesis, and its in vivo activity was evaluated in mice. The siRNA conjugate was obtained by the solid-phase synthesis method described in Example 2, and the specific sequence and modification information are shown in Table 3.
表3
Table 3
实验方法:Experimental methods:
选择6-8周龄的SPF级雌性C57BL/6J小鼠,小鼠的体重为20±2g。给药前对上述小鼠称重并观察状态,选取体重均一、状态无异常的动物进行随机分组,每组4只,其中实验组小鼠给予偶联物,溶媒组小鼠给予磷酸盐缓冲盐水(PBS),按照每只小鼠给予1mg/kg偶联物的剂量进行皮下给药。在给药后7天和21天,分别进行动物安乐死,取肝组织,按照常规方法,将肝脏切块并置于RNALater(Invitrogen,AM7021M)中,用于后续RNA提取。将肝脏组织放入裂解液(志昂生物,MNTR/FX96)中研磨(上海净信,JXFSTPRP-48L)提取总RNA,反转录为cDNA(Takara,6210B),通过荧光法qPCR(Vazyme,Q711)检测靶基因TTR mRNA和C5 mRNA的表达水平。SPF-grade female C57BL/6J mice aged 6-8 weeks, weighing 20±2g, were selected. Before administration, the mice were weighed and observed. Animals with uniform weight and normal condition were randomly divided into groups of 4. The experimental group received the conjugate, while the solvent group received phosphate-buffered saline (PBS). The conjugate was administered subcutaneously at a dose of 1 mg/kg per mouse. The animals were euthanized on days 7 and 21 post-administration, and liver tissue was harvested. The liver was dissected using standard methods and placed in an RNA separator (Invitrogen, AM7021M) for subsequent RNA extraction. Liver tissue was ground in lysis buffer (Zhiang Bio, MNTR/FX96) (Shanghai Jingxin, JXFSTPRP-48L) to extract total RNA, which was reverse transcribed into cDNA (Takara, 6210B). The expression levels of target genes TTR mRNA and C5 mRNA were detected by fluorescence qPCR (Vazyme, Q711).
目的基因C5引物:C5 primer for target gene:
正向引物:CCAGCCCAATCAAGTTCCTAGAG(SEQ ID NO:9);Forward primer: CCAGCCCAATCAAGTTCCTAGAG (SEQ ID NO: 9);
反向引物:CGGCGTGTAAACAGGTTTGTC(SEQ ID NO:10);Reverse primer: CGGCGTGTAAACAGGTTTGTC (SEQ ID NO: 10);
目的基因TTR引物:Target gene TTR primers:
正向引物:CTGCTGTAGACGTGGCTGTAA(SEQ ID NO:11);Forward primer: CTGCTGTAGACGTGGCTGTAA (SEQ ID NO:11);
反向引物:CTTCCAGTACGATTTGGTGTCC(SEQ ID NO:12);Reverse primer: CTTCCAGTACGATTTGGTGTCC (SEQ ID NO: 12);
内参基因GAPDH引物:GAPDH primers for internal reference gene:
正向引物:TGCACCACCAACTGCTTAG(SEQ ID NO:13);Forward primer: TGCACCACCAACTGCTTAG (SEQ ID NO:13);
反向引物:GATGCAGGGATGATGTTC(SEQ ID NO:14);Reverse primer: GATGCAGGGATGATGTTC (SEQ ID NO:14);
结果以siRNA给药组相比于溶媒组(溶媒组为100%)的剩余表达水平表示,用于注射的缀合物序列见表3,结果如图2和图3,与两个单靶的缀合物混合物(SD004757+SD004383)相比,双靶分子中SD004885的活性最好,且与混合物比较相近。The results are expressed as the residual expression level of the siRNA-administered group compared to the solvent group (the solvent group was 100%). The conjugate sequences used for injection are shown in Table 3. The results are shown in Figures 2 and 3. Compared with the mixture of two single-target conjugates (SD004757+SD004383), the dual-target molecule SD004885 showed the best activity and was similar to the mixture.
实施例5不同设计的双靶分子在小鼠体内活性Example 5: Activity of different designed dual-target molecules in mice
在本实施例中,选取siRNA进行缀合合成,在小鼠中测评体内活性。siRNA偶联物通过实施例2的固相合成方法获得,具体序列及修饰信息见表4。In this embodiment, siRNA was selected for conjugation synthesis, and its in vivo activity was evaluated in mice. The siRNA conjugate was obtained by the solid-phase synthesis method described in Example 2, and the specific sequence and modification information are shown in Table 4.
表4
Table 4
实验方法:Experimental methods:
选择6-8周龄的SPF级雌性C57BL/6J小鼠,小鼠的体重为20±2g。给药前对上述小鼠称重并观察状态,选取体重均一、状态无异常的动物进行随机分组,每组4只,其中实验组小鼠给予偶联物,溶媒组小鼠给予磷酸盐缓冲盐水(PBS),按照每只小鼠给予1mg/kg偶联物的剂量进行皮下给药。在给药后7天,进行动物安乐死,取肝组织,按照常规方法,将肝脏切块并置于RNALater(Invitrogen,AM7021M)中,用于后续RNA提取。将肝脏组织放入裂解液(志昂生物,MNTR/FX96)中研磨(上海净信,JXFSTPRP-48L)提取总RNA,反转录为cDNA(Takara,6210B),通过荧光法qPCR(Vazyme,Q711)检测靶基因TTR mRNA和C5 mRNA的表达水平。SPF-grade female C57BL/6J mice aged 6-8 weeks, weighing 20±2g, were selected. Before administration, the mice were weighed and observed. Animals with uniform weight and normal condition were randomly divided into groups of 4 mice each. The experimental group received the conjugate, while the solvent group received phosphate-buffered saline (PBS). The conjugate was administered subcutaneously at a dose of 1 mg/kg per mouse. Seven days after administration, the animals were euthanized, and liver tissue was harvested. The liver was dissected and placed in an RNA separator (Invitrogen, AM7021M) for subsequent RNA extraction. The liver tissue was ground in lysis buffer (Zhiang Biotechnology, MNTR/FX96) (Shanghai Jingxin, JXFSTPRP-48L) to extract total RNA, which was reverse transcribed into cDNA (Takara, 6210B). The expression levels of target genes TTR mRNA and C5 mRNA were detected by fluorescence qPCR (Vazyme, Q711).
目的基因C5引物:C5 primer for target gene:
正向引物:CCAGCCCAATCAAGTTCCTAGAG(SEQ ID NO:9);Forward primer: CCAGCCCAATCAAGTTCCTAGAG (SEQ ID NO: 9);
反向引物:CGGCGTGTAAACAGGTTTGTC(SEQ ID NO:10);Reverse primer: CGGCGTGTAAACAGGTTTGTC (SEQ ID NO: 10);
目的基因TTR引物:Target gene TTR primers:
正向引物:CTGCTGTAGACGTGGCTGTAA(SEQ ID NO:11);Forward primer: CTGCTGTAGACGTGGCTGTAA (SEQ ID NO:11);
反向引物:CTTCCAGTACGATTTGGTGTCC(SEQ ID NO:12);Reverse primer: CTTCCAGTACGATTTGGTGTCC (SEQ ID NO: 12);
内参基因GAPDH引物:GAPDH primers for internal reference gene:
正向引物:TGCACCACCAACTGCTTAG(SEQ ID NO:13);Forward primer: TGCACCACCAACTGCTTAG (SEQ ID NO:13);
反向引物:GATGCAGGGATGATGTTC(SEQ ID NO:14);Reverse primer: GATGCAGGGATGATGTTC (SEQ ID NO:14);
结果以siRNA给药组相比于溶媒组(溶媒组为100%)的剩余表达水平表示,用于注射的缀合物序列见表4,结果如图4,与两个单靶的缀合物混合物(SD004757+SD004383)相比,双靶分子中SD005429的活性最好,且与混合物的相近。The results are expressed as the residual expression level of the siRNA-administered group compared to the solvent group (the solvent group was 100%). The conjugate sequences used for injection are shown in Table 4. The results are shown in Figure 4. Compared with the mixture of two single-target conjugates (SD004757+SD004383), the activity of SD005429 in the dual-target molecule was the best and similar to that of the mixture.
实施例6双靶分子在Hep3B细胞中的体外活性Example 6: In vitro activity of dual-target molecules in Hep3B cells
在本实施例中,选取siRNA进行缀合合成,在Hep3B细胞中测评体外活性。siRNA偶联物通过实施例2的固相合成方法获得,具体序列及修饰信息见表5。In this embodiment, siRNA was selected for conjugation synthesis, and its in vitro activity was evaluated in Hep3B cells. The siRNA conjugate was obtained by the solid-phase synthesis method described in Example 2, and the specific sequence and modification information are shown in Table 5.
表5
Table 5
在Hep3B细胞中采用11个浓度(5nM起始,3倍梯度稀释)对表5中的siRNA进行体外活性检测。In Hep3B cells, the in vitro activity of the siRNAs listed in Table 5 was tested using 11 concentrations (starting at 5 nM and serially diluted 3-fold).
Hep3B细胞培养于含10%胎牛血清的DMEM高糖培养基中,在37℃,5% CO2条件下培养。转染前24h,将Hep3B细胞接种于96孔板,接种密度为每孔2万个细胞,每孔100μL培养基。Hep3B cells were cultured in DMEM high-glucose medium containing 10% fetal bovine serum at 37°C and 5% CO2 . 24 hours before transfection, Hep3B cells were seeded into 96-well plates at a density of 20,000 cells per well with 100 μL of medium per well.
参照产品说明手册,使用Lipofectamine RNAiMAX(ThermoFisher,13778150)转染siRNA,siRNA转染的终浓度为5nM、1.67nM、0.56nM、0.19nM、0.062nM、0.021nM、0.0069nM、0.0023nM、0.00076nM、0.00025nM、0.000085nM。在转染24小时后,利用组织细胞提取试剂盒(志昂生物,MNTR/FX96)从细胞中分离RNA,采用逆转录试剂盒(HiScript III All-in-one RT SuperMix Perfect for qPCR,R333-01)进行反转录,并以qPCR反应试剂盒(Yeasen,11211ES08)进行定量实时PCR检测,测定PCSK9和APOC3的mRNA水平,根据GAPDH内参基因水平对PCSK9和APOC3的mRNA水平进行校正。Referring to the product instruction manual, siRNA was transfected using Lipofectamine RNAiMAX (ThermoFisher, 13778150). The final siRNA transfection concentrations were 5 nM, 1.67 nM, 0.56 nM, 0.19 nM, 0.062 nM, 0.021 nM, 0.0069 nM, 0.0023 nM, 0.00076 nM, 0.00025 nM, and 0.000085 nM. Twenty-four hours after transfection, RNA was isolated from cells using a tissue cell extraction kit (Zhiang Bio, MNTR/FX96). Reverse transcription was performed using a reverse transcription kit (HiScript III All-in-one RT SuperMix Perfect for qPCR, R333-01), and quantitative real-time PCR was performed using a qPCR reaction kit (Yeasen, 11211ES08) to determine the mRNA levels of PCSK9 and APOC3. The mRNA levels of PCSK9 and APOC3 were corrected based on the level of the GAPDH internal reference gene.
目的基因PCSK9引物和探针:Primers and probes for the target gene PCSK9:
正向引物:ACGTGGCTGGCATTGCA(SEQ ID NO:15);Forward primer: ACGTGGCTGGCATTGCA (SEQ ID NO: 15);
反向引物:AAGTGGATCAGTCTCTGCCTCAA(SEQ ID NO:16);Reverse primer: AAGTGGATCAGTCTCTGCCTCAA (SEQ ID NO: 16);
探针:CATGATGCTGTCTGCCGAGCCG(SEQ ID NO:17);Probe: CATGATGCTGTCTGCCGAGCCG (SEQ ID NO:17);
目的基因APOC3引物和探针:APOC3 primers and probes for the target gene:
正向引物:GGGTGACCGATGGCTTCA(SEQ ID NO:18);Forward primer: GGGTGACCGATGGCTTCA (SEQ ID NO:18);
反向引物:GTCCAAATCCCAGAACTCAGAGA(SEQ ID NO:19);Reverse primer: GTCCAAATCCCAGAACTCAGAGA (SEQ ID NO:19);
探针:ACTACTGGAGCACCGTTA(SEQ ID NO:20);Probe: ACTACTGGAGCACCGTTA (SEQ ID NO:20);
内参基因GAPDH引物和探针:GAPDH primers and probes for the internal reference gene:
正向引物:TGCACCACCAACTGCTTAGC(SEQ ID NO:21);Forward primer: TGCACCACCAACTGCTTAGC (SEQ ID NO:21);
反向引物:ACTGTGGTCATGAGTCCTTCCA(SEQ ID NO:22);Reverse primer: ACTGTGGTCATGAGTCCTTCCA (SEQ ID NO:22);
探针:TCATCCATGACAACTTTGGTA(SEQ ID NO:23)。Probe: TCATCCATGACAACTTTGGTA (SEQ ID NO:23).
结果以相对于未经过siRNA处理的细胞的PCSK9和APOC3 mRNA表达(其为100%)的剩余百分比来表示,剩余百分比越小,代表siRNA的抑制活性越高,结果见图5、图6以及表6。从IC50数值上看,双靶分子SD5518-G2760G3077活性要明显优于单靶混合物(SD004198+SD005693)活性。The results are expressed as the remaining percentage of PCSK9 and APOC3 mRNA expression (represented as 100%) relative to cells not treated with siRNA. The lower the remaining percentage, the higher the inhibitory activity of the siRNA. The results are shown in Figures 5 and 6 and Table 6. Based on the IC50 values, the dual-target molecule SD5518-G2760G3077 showed significantly better activity than the single-target mixture (SD004198+SD005693).
表6
Table 6
相比现有小核酸干扰技术,我们提供了一种新的双靶siRNA分子设计方案,并通过实验结果证明该方案可以实现在同一细胞内同时抑制多个靶标基因的表达,且药效活到与单靶标siRNA分子的活性相近甚至更好。本申请的双靶siRNA分子可以实现一次给药即可同时抑制多个靶基因表达,给药依从性更佳,且化合物合成质量更加可控,使用更加便利。Compared to existing small nucleic acid interference technologies, we offer a novel dual-target siRNA molecule design scheme. Experimental results demonstrate that this scheme can simultaneously inhibit the expression of multiple target genes within the same cell, with efficacy comparable to or even better than that of single-target siRNA molecules. The dual-target siRNA molecule of this application allows for simultaneous inhibition of multiple target gene expression with a single dose, resulting in better dosing compliance, more controllable compound synthesis quality, and greater ease of use.
以上对本发明做了详尽的描述,其目的在于让熟悉此领域技术的人士能够了解本发明的内容并加以实施,并不能以此限制本发明的保护范围,凡根据本发明的精神实质所作的等效变化或修饰,都应涵盖在本发明的保护范围内。The present invention has been described in detail above, with the aim of enabling those skilled in the art to understand and implement the invention. However, this description should not be construed as limiting the scope of protection of the invention. All equivalent changes or modifications made in accordance with the spirit and essence of the invention should be included within the scope of protection of the invention.
Claims (15)
A multi-target double-stranded RNA conjugate, characterized in that it comprises a first double-stranded RNA, a second double-stranded RNA, and a linker respectively connected to the first double-stranded RNA and the second double-stranded RNA, wherein the linker comprises one or more groups as shown in general structural formula (I):
Wherein, L is absent or selected from one or more linkage combinations of the groups shown in formulas (A1)-(A14):
The multi-target double-stranded RNA conjugate according to any one of claims 1 to 4 is characterized in that: the group represented by the general structural formula (I) is selected from any one of the following structures:
The multi-target double-stranded RNA conjugate according to any one of claims 1 to 6 is characterized in that: the linker has the structure of formula (II):
The multi-target double-stranded RNA conjugate according to any one of claims 1 to 7 is characterized in that: the multi-target double-stranded RNA conjugate is selected from any one of the following structures:
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| WO2023283403A2 (en) * | 2021-07-09 | 2023-01-12 | Alnylam Pharmaceuticals, Inc. | Bis-rnai compounds for cns delivery |
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