CN110144353B - A rubber tree U6 gene promoter proHbU6.6 and its cloning and application - Google Patents

A rubber tree U6 gene promoter proHbU6.6 and its cloning and application Download PDF

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CN110144353B
CN110144353B CN201910466659.9A CN201910466659A CN110144353B CN 110144353 B CN110144353 B CN 110144353B CN 201910466659 A CN201910466659 A CN 201910466659A CN 110144353 B CN110144353 B CN 110144353B
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辛士超
杨先锋
范月婷
戴雪梅
华玉伟
黄华孙
王春
王克剑
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Abstract

本发明属于基因工程技术领域,具体涉及一种橡胶树RNA聚合酶III型启动子,更具体涉及一种橡胶树U6基因启动子proHbU6.6,并进一步公开其克隆方法与应用。本发明首次在巴西橡胶树中克隆获得橡胶树RNA聚合酶III型启动子‑‑橡胶树内源U6启动子proHbU6.6,该启动子为橡胶树内源RNA聚合酶III型启动子,该启动子具有高效转录活性,可驱动下游sgRNA的表达,并通过瞬时转化橡胶树原生质体验证了该启动子的活性及其应用于橡胶树CRISPR/Cas9基因编辑系统的可行性,并实现了CRISPR/Cas9介导的橡胶树基因组靶向编辑。

Figure 201910466659

The invention belongs to the technical field of genetic engineering, in particular to a rubber tree RNA polymerase type III promoter, more specifically to a rubber tree U6 gene promoter proHbU6.6, and further discloses its cloning method and application. The present invention clones the rubber tree RNA polymerase III type promoter in Hevea brasiliensis for the first time - the rubber tree endogenous U6 promoter proHbU6.6, the promoter is the rubber tree endogenous RNA polymerase type III promoter, and the promoter has efficient transcription The activity of the promoter can drive the expression of downstream sgRNA, and the activity of the promoter and its feasibility in the rubber tree CRISPR/Cas9 gene editing system were verified by transient transformation of rubber tree protoplasts, and the CRISPR/Cas9-mediated rubber tree genome target was realized to the editor.

Figure 201910466659

Description

一种橡胶树U6基因启动子proHbU6.6及其克隆与应用A rubber tree U6 gene promoter proHbU6.6 and its cloning and application

技术领域technical field

本发明属于基因工程技术领域,具体涉及一种橡胶树RNA聚合酶III型启动子,更具体涉及一种橡胶树U6基因启动子proHbU6.6,并进一步公开其克隆方法与应用。The invention belongs to the technical field of genetic engineering, in particular to a rubber tree RNA polymerase type III promoter, more specifically to a rubber tree U6 gene promoter proHbU6.6, and further discloses its cloning method and application.

背景技术Background technique

天然橡胶一直是我国重要的战略物资和储备资源,目前,我国橡胶树新品种的选育仍然是以传统的杂交育种为主。由于橡胶树生长缓慢,导致了常规育种存在效率低、周期长的问题,这严重地阻碍了橡胶树育种的进程。随着生物技术的发展,分子育种技术在橡胶树中的应用加快了橡胶树新品种的培育,通过农杆菌或基因枪导入外源基因成为橡胶树遗传改良的重要方式。然而,在上述外源基因片段导入的过程中,基因片段是随机地插入橡胶树基因组的,不仅插入位点不受控制,同时还存在位置效益等问题(Yutaka等,2018,Chromosoma,doi:10.1007/s00412-018-0677-6.)。Natural rubber has always been an important strategic material and reserve resource in my country. At present, the selection and breeding of new rubber tree varieties in my country is still based on traditional cross-breeding. Due to the slow growth of rubber trees, conventional breeding has problems of low efficiency and long cycle, which seriously hinders the progress of rubber tree breeding. With the development of biotechnology, the application of molecular breeding technology in rubber trees has accelerated the cultivation of new varieties of rubber trees, and the introduction of exogenous genes through Agrobacterium or gene gun has become an important way of genetic improvement of rubber trees. However, in the process of the above-mentioned introduction of exogenous gene fragments, the gene fragments are randomly inserted into the rubber tree genome, not only the insertion site is not controlled, but also there are problems such as location benefits (Yutaka et al., 2018, Chromosoma, doi: 10.1007/ s00412-018-0677-6.).

CRISPR/Cas9(clustered regularly interspaced short palindromicrepeats/CRISPR-associated nuclease 9)基因组编辑技术的出现为基因组的精确修饰提供了新的途径(Yongwei等,2016,Front Plant Sci,7:1928;Collonnier等,2017,Methods,121-122:103-117;Yutaka等,2018,Chromosoma,doi:10.1007/s00412-018-0677-6),其介导基因编辑的基本原理是依靠单链向导RNA(single guide RNA,sgRNA)引导下,利用核酸酶Cas9定点结合和切割基因组特异性位点(PAM)上游特定靶位点,产生DNA双链断裂(DSBs),进而引起靶位点的突变。同时,通过同源重组修复(HR)或非同源末端连接(NHEJ)生物内源修复机制,也可将外源供体DNA插入到sgRNA靶位点,从而实现对基因组上特定位点的突变以及特定DNA片段的敲除、插入及替换等(Lee等,2017,Elife,6:e25312.;Smirnikhina等,2018,Hum Genet,138(1):1-19.),并由此实现目标基因的精准化品种改良。目前,在拟南芥(Miki D等,2018,Nat Commun.9(1):1967.)、水稻(Li J等,2016,NatPlants,2(10):16139.)及玉米(Gil-Humanes J等,2017,Plant J,89(6):1251-1262.)等植物中已经利用基于质粒CRISRP/Cas9基因组编辑技术实现了外源基因的导入。此外,在玉米、小麦、水稻中也已经通过CRISPR/Cas9-sgRNA RNP瞬时转化也实现了外源基因的导入(Svitashev S等,2015,Plant Physiol,169(2):931-945.;Liang Z等,2017,Nat Commun,8:14261.;Sun Y W等,2016,Mol Plant,9(4):628-631);另外,Liang等(2018,NatureProtocols,13(3):413-430.)也利用基因枪将Cas9和sgRNA表达载体质粒,通过瞬时转化受体细胞实现基因编辑。The emergence of CRISPR/Cas9 (clustered regularly interspaced short palindromicrepeats/CRISPR-associated nuclease 9) genome editing technology provides a new approach for precise genome modification (Yongwei et al., 2016, Front Plant Sci, 7:1928; Collonnier et al., 2017, Methods, 121-122: 103-117; Yutaka et al., 2018, Chromosoma, doi: 10.1007/s00412-018-0677-6), the basic principle of which mediates gene editing is to rely on single-stranded guide RNA (single guide RNA, sgRNA) ), the nuclease Cas9 is used to site-specifically bind and cleave specific target sites upstream of the genome-specific site (PAM), resulting in DNA double-strand breaks (DSBs), which in turn cause mutation of the target site. At the same time, through homologous recombination repair (HR) or non-homologous end joining (NHEJ) biological endogenous repair mechanisms, exogenous donor DNA can also be inserted into the sgRNA target site, so as to achieve mutation of specific sites on the genome And the knockout, insertion and replacement of specific DNA fragments (Lee et al., 2017, Elife, 6: e25312.; Smirnikhina et al., 2018, Hum Genet, 138(1): 1-19.), and thus achieve the target gene precise variety improvement. Currently, in Arabidopsis (Miki D et al., 2018, Nat Commun. 9(1): 1967.), rice (Li J et al., 2016, Nat Plants, 2(10): 16139.) and maize (Gil-Humanes J et al, 2017, Plant J, 89(6): 1251-1262.) and other plants have used plasmid-based CRISRP/Cas9 genome editing technology to achieve the introduction of foreign genes. In addition, the introduction of foreign genes has also been achieved by CRISPR/Cas9-sgRNA RNP transient transformation in maize, wheat, and rice (Svitashev S et al., 2015, Plant Physiol, 169(2): 931-945.; Liang Z et al., 2017, Nat Commun, 8:14261.; Sun Y W et al., 2016, Mol Plant, 9(4):628-631); in addition, Liang et al. (2018, Nature Protocols, 13(3):413-430.) Gene editing was also achieved by transiently transforming recipient cells with Cas9 and sgRNA expression vector plasmids using a gene gun.

研究显示,在CRISPR/Cas9基因编辑体系中,受体细胞中sgRNA的含量水平是影响编辑效率的重要因素之一,因此,可精确启动sgRNA体内转录的聚合酶III型启动子得到了广泛的关注(Jinek等,2016,science 337:816-821;Mali等,2013,science 339:823-826;Cong等,2013,Science 339:819-823)。U6RNA是一种参与mRNA前体剪接的非编码RNA,其对应的U6启动子是一类RNA聚合酶III型启动子,并已经在许多物种的CRISPR/Cas9系统中得到了大量的应用(Kim和Nam,,2013,plant mol.Bio.Rep.31:581-593;Li等,2007,J.integrate plant biol..49:222-229;H.Jia等,2014,pone,9(4):e93806.)。Studies have shown that in the CRISPR/Cas9 gene editing system, the content level of sgRNA in recipient cells is one of the important factors affecting editing efficiency. Therefore, polymerase type III promoters that can precisely initiate sgRNA transcription in vivo have received extensive attention. (Jinek et al, 2016, Science 337:816-821; Mali et al, 2013, Science 339:823-826; Cong et al, 2013, Science 339:819-823). U6 RNA is a non-coding RNA involved in pre-mRNA splicing, and its corresponding U6 promoter is a class of RNA polymerase type III promoters, and has been widely used in CRISPR/Cas9 systems in many species (Kim and Nam,, 2013, plant mol.Bio.Rep.31:581-593; Li et al., 2007, J.integrate plant biol..49:222-229; H.Jia et al., 2014, pone, 9(4): e93806.).

虽然CRISPR/Cas9基因组编辑技术目前已在多个物种中得到广泛地应用,但是针对橡胶树的基因编辑技术尚且未见报道。这主要是由于虽然在许多物种中U6启动子已有大量的报道,但外源的的U6启动子通常并不适用(X.Sun等,2015,Sci.Rep.,5p.10342)。可见,缺少适用的U6启动子已成为目前橡胶树CRISPR/Cas9基因编辑体系的限制因子,也限制了CRISPR/Cas9基因组编辑技术在橡胶树育种中的应用。因此,筛选出在橡胶树中有功能活性的U6启动子对于橡胶树的基因育种技术发展具有积极的意义。Although CRISPR/Cas9 genome editing technology has been widely used in many species, the gene editing technology for rubber tree has not been reported. This is mainly due to the fact that although U6 promoters have been extensively reported in many species, exogenous U6 promoters are generally not applicable (X. Sun et al., 2015, Sci. Rep., 5p. 10342). It can be seen that the lack of a suitable U6 promoter has become a limiting factor for the current rubber tree CRISPR/Cas9 gene editing system, and also limits the application of CRISPR/Cas9 genome editing technology in rubber tree breeding. Therefore, screening out the functionally active U6 promoter in rubber tree has positive significance for the development of genetic breeding technology of rubber tree.

发明内容SUMMARY OF THE INVENTION

为此,本发明所要解决的技术问题在于提供一种橡胶树U6基因启动子proHbU6.6,并进一步公开其克隆方法及应用。Therefore, the technical problem to be solved by the present invention is to provide a rubber tree U6 gene promoter proHbU6.6, and further disclose its cloning method and application.

为解决上述技术问题,本发明所述的一种橡胶树U6基因启动子proHbU6.6,所述启动子proHbU6.6包括如SEQ ID No:1所示的DNA核苷酸序列。上述橡胶树U6基因启动子proHbU6.6属于橡胶树U6snRNA基因的RNA聚合酶III型启动子,来源于巴西橡胶树(Heveabrasiliensis)。In order to solve the above-mentioned technical problems, a rubber tree U6 gene promoter proHbU6.6 according to the present invention, the promoter proHbU6.6 includes the DNA nucleotide sequence shown in SEQ ID No: 1. The above-mentioned Hevea U6 gene promoter proHbU6.6 belongs to the RNA polymerase III type promoter of the Hevea U6 snRNA gene, and is derived from Heveabrasiliensis.

具体的,所述启动子proHbU6.6的DNA核苷酸序列如SEQ ID No:1所示。Specifically, the DNA nucleotide sequence of the promoter proHbU6.6 is shown in SEQ ID No: 1.

本发明还公开了一种橡胶树瞬时转化编辑载体,即含有所述的橡胶树U6基因启动子proHbU6.6。The invention also discloses a rubber tree transient transformation editing vector, which contains the rubber tree U6 gene promoter proHbU6.6.

具体的,所述瞬时转化编辑载体为重组质粒proHbU6.6-sgRNA-163Cas9M。Specifically, the transient transformation editing vector is a recombinant plasmid proHbU6.6-sgRNA-163Cas9M.

本发明还公开了一种克隆所述的橡胶树U6基因启动子proHbU6.6的方法,包括如下步骤:The present invention also discloses a method for cloning described rubber tree U6 gene promoter proHbU6.6, comprising the following steps:

(1)以巴西橡胶树热研7-33-97叶片基因组DNA为模板,设计如下特异引物:(1) The following specific primers were designed with the genomic DNA of the Hexa brasiliensis 7-33-97 leaves as the template:

proHbU6.6-F:ATCTAACATTGTCTTGCTTC;proHbU6.6-F: ATCTAACATTGTCTTGCTTC;

proHbU6.6-R:CGGTTGCTCAATGCTTCGTG;proHbU6.6-R:CGGTTGCTCAATGCTTCGTG;

(2)使用KOD FX酶在20μl反应体系中进行PCR扩增;(2) PCR amplification was performed in a 20 μl reaction system using KOD FX enzyme;

(3)将扩增产物TA克隆到pMD19-T载体上,转化大肠杆菌Dh5α中并挑重组载体单克隆测序,即得462bp橡胶树U6基因启动子DNA片段proHbU6.6。(3) The amplified product TA was cloned into the pMD19-T vector, transformed into Escherichia coli Dh5α, and the recombinant vector was single-cloned for sequencing to obtain the 462bp rubber tree U6 gene promoter DNA fragment proHbU6.6.

具体的,所述步骤(2)中,所述PCR扩增步骤的反应程序为:95℃预变性2min,98℃变性10s,59℃退火30s,72℃延伸1min,35个循环,72℃终延伸5min。Specifically, in the step (2), the reaction procedure of the PCR amplification step is: pre-denaturation at 95°C for 2 min, denaturation at 98°C for 10s, annealing at 59°C for 30s, extension at 72°C for 1 min, 35 cycles, and finally at 72°C Extend 5min.

本发明还公开了一种构建所述的橡胶树瞬时转化编辑载体的方法,包括如下步骤:The present invention also discloses a method for constructing the instant transformation and editing vector of rubber tree, comprising the following steps:

(a)将克隆的启动子proHbU6.6构建到中间载体SK-5G上(a) Construction of the cloned promoter proHbU6.6 into the intermediate vector SK-5G

用SalI和XhoI双酶切SK-5G载体,回收2913bp载体骨架片段,设计如下引物分别在proHbU6.6序列和载体gRNA序列两端引入同源序列,将proHbU6.6和gRNA组装到SK-5G载体上得到proHbU6.6-SK-5G:The SK-5G vector was digested with SalI and XhoI, and the 2913bp vector backbone fragment was recovered. The following primers were designed to introduce homologous sequences at both ends of the proHbU6.6 sequence and the vector gRNA sequence, respectively. ProHbU6.6 and gRNA were assembled into the SK-5G vector Get proHbU6.6-SK-5G on:

proHbU6.6-lF:proHbU6.6-lF:

GCGGCCGCAGATCTGCTAGCGTCGACATCTAACATTGTCTTGCTTC; GCGGCCGCAGATCTGCTAGCGTCGAC ATCTAACATTGTCTTGCTTC;

proHbU6.6-lR:proHbU6.6-lR:

GGTGTTGTGTTCACCTGCGAGCCGGTTGCTCAATGCTTCGTG; GGTGTTGTGTTCACCTGCGAGCCGGTTGCTCAATGCTTCGTG ;

gRNA-sF:GCTCGCAGGTGAACACAACACC;gRNA-sF: GCTCGCAGGTGAACACAACACC;

gRNA-sR:TTGGGTACCGAGGATCCTCTAGA;gRNA-sR: TTGGGTACCGAGGATCCTCTAGA;

(b)将靶位点构建到proHbU6.6-SK-5G载体上(b) Construction of the target site into the proHbU6.6-SK-5G vector

在橡胶树HbTFL1-3基因上选择如下靶位点:The following target sites were selected on the rubber tree HbTFL1-3 gene:

GCCCAGCATAGGGATCCAC,用AarI酶切proHbU6.6-SK-5G载体后两端形成3’-TGGC和5’-GTTT两个粘性末端;GCCCAGCATAGGGATCCAC, the proHbU6.6-SK-5G vector was digested with AarI to form two sticky ends of 3'-TGGC and 5'-GTTT;

合成靶位点序列,并引入5’-ACCG和3’-CAAA两个粘性末端(图3):Synthesize the target site sequence and introduce two sticky ends, 5'-ACCG and 3'-CAAA (Figure 3):

正向:ACCGGCCCAGCATAGGGATCCAC;Forward: ACCGGCCCCAGCATAGGGATCCAC;

反向:AAACGTGGATCCCTATGCTGGGC;Reverse: AAACGTGGATCCCTATGCTGGGC;

将上述正向和反向靶点序列DNA混匀,100℃处理后进行室温退火,形成带有与proHbU6.6-SK-5G载体互补粘性末端的双链DNA,然后使用T4 DNA连接酶将该片段连接到载体proHbU6.6启动子下游位置得到完整sgRNA表达框;The above-mentioned forward and reverse target sequence DNAs were mixed, treated at 100°C, and then annealed at room temperature to form double-stranded DNA with cohesive ends complementary to the proHbU6.6-SK-5G vector, which was then ligated with T4 DNA ligase. The fragment is connected to the downstream position of the proHbU6.6 promoter of the vector to obtain a complete sgRNA expression cassette;

(c)sgRNA表达框构建到瞬时转化编辑载体163Cas9M上(c) Construction of sgRNA expression cassette into transient transformation editing vector 163Cas9M

用KpnI和BglII双酶切proHbU6.6-sgRNA-SK-5G载体,回收625bp的小片段sgRNA表达框;The proHbU6.6-sgRNA-SK-5G vector was digested with KpnI and BglII, and a small fragment of 625bp sgRNA expression cassette was recovered;

用KpnI和BamHI双酶切163Cas9M载体,回收7919bp大片段;The 163Cas9M vector was double digested with KpnI and BamHI, and a large fragment of 7919bp was recovered;

使用T4DNA连接酶将小片段sgRNA表达框构建到163Cas9M载体上得到橡胶树瞬时转化编辑载体proHbU6.6-sgRNA-163Cas9M,即得。Use T4 DNA ligase to construct the small fragment sgRNA expression cassette into the 163Cas9M vector to obtain the rubber tree transient transformation editing vector proHbU6.6-sgRNA-163Cas9M.

本发明还公开了一种对橡胶树进行基因组编辑的方法,即包括将所述的橡胶树瞬时转化编辑载体导入橡胶树原生质体的步骤。The invention also discloses a method for genome editing of rubber tree, which comprises the step of introducing the rubber tree transient transformation editing vector into rubber tree protoplast.

本发明还公开了所述的橡胶树U6基因启动子proHbU6.6在橡胶树分子育种技术领域中的应用。The invention also discloses the application of the rubber tree U6 gene promoter proHbU6.6 in the technical field of rubber tree molecular breeding.

本发明还公开了所述的橡胶树瞬时转化编辑载体在橡胶树分子育种技术领域中的应用。The invention also discloses the application of the rubber tree transient transformation editing vector in the technical field of rubber tree molecular breeding.

本发明首次在巴西橡胶树中克隆获得橡胶树RNA聚合酶III型启动子--橡胶树内源U6启动子proHbU6.6,该启动子为橡胶树内源RNA聚合酶III型启动子,该启动子具有高效转录活性,可驱动下游sgRNA的表达,并经过筛选橡胶树内源开花调控基因HbTFL1-3的靶点序列后,将其构建到编辑载体中proHbU6.6启动子下游,通过PEG介导橡胶树叶片原生质瞬时转化将编辑载体导入橡胶橡胶树细胞内实现了对HbTFL1-3基因靶位点的编辑,验证了proHbU6.6启动子的活性,也首次在橡胶树中建立了有效的CRISPR/Cas9基因编辑技术体系。The present invention clones the rubber tree RNA polymerase III type promoter in Hevea brasiliensis for the first time-the rubber tree endogenous U6 promoter proHbU6.6, the promoter is the rubber tree endogenous RNA polymerase type III promoter, and the promoter has efficient transcription It can drive the expression of downstream sgRNA, and after screening the target sequence of the endogenous flowering regulatory gene HbTFL1-3 in rubber tree, it was constructed into the editing vector downstream of the proHbU6.6 promoter, and PEG-mediated transient transformation of rubber tree leaf protoplasm The editing vector was introduced into the rubber tree cells to realize the editing of the HbTFL1-3 gene target site, and the activity of the proHbU6.6 promoter was verified. For the first time, an effective CRISPR/Cas9 gene editing technology system was established in rubber tree.

本发明首次将克隆的橡胶树内源RNA聚合酶III型启动子,通过瞬时转化橡胶树原生质体验证了该启动子的活性及其应用于橡胶树CRISPR/Cas9基因编辑系统的可行性,并首次实现了CRISPR/Cas9介导的橡胶树基因组靶向编辑。经验证,编辑后靶基因片段重组克隆测序结果发现突变类型多为单碱基的缺失,其中,也出现了单碱基的插入和小片段的缺失。。因此,本发明克隆的启动子proHbU6.6可应用于橡胶树CRISPR/Cas9基因编辑体系,从而实现对橡胶树高效精准的品种改良。In the present invention, the cloned rubber tree endogenous RNA polymerase type III promoter is used for the first time to transform rubber tree protoplasts to verify the activity of the promoter and the feasibility of applying it to the rubber tree CRISPR/Cas9 gene editing system, and realize the CRISPR/Cas9 gene editing system for the first time. /Cas9-mediated targeted editing of the rubber tree genome. It has been verified that the results of recombinant cloning and sequencing of the edited target gene fragments show that most of the mutations are single-base deletions, including single-base insertions and small fragment deletions. . Therefore, the cloned promoter proHbU6.6 of the present invention can be applied to the rubber tree CRISPR/Cas9 gene editing system, thereby realizing efficient and accurate variety improvement of rubber tree.

附图说明Description of drawings

为了使本发明的内容更容易被清楚的理解,下面根据本发明的具体实施例并结合附图,对本发明作进一步详细的说明,其中,In order to make the content of the present invention easier to understand clearly, the present invention will be described in further detail below according to specific embodiments of the present invention and in conjunction with the accompanying drawings, wherein,

图1为橡胶树HbU6.6基因与拟南芥和棉花U6基因序列比对,其中,框线位置为U6snRNA转录的关键元件USE(upstream sequence element)及TATA box,箭头位置处为转录起始位点;Fig. 1 shows the sequence alignment of HbU6.6 gene of rubber tree with Arabidopsis thaliana and cotton U6 gene, wherein, the position of the box line is the key element USE (upstream sequence element) and TATA box of U6 snRNA transcription, and the position of the arrow is the transcription initiation site ;

图2为橡胶树HbU6.6基因启动子的克隆电泳图,可见经PCR扩增得到了462bp的HbU6.6基因启动子片段;Fig. 2 is the cloning electrophoresis diagram of the HbU6.6 gene promoter of rubber tree, it can be seen that the HbU6.6 gene promoter fragment of 462bp has been obtained by PCR amplification;

图3为橡胶树瞬时转化编辑载体proHbU6.6-sgRNA-163Cas9M结构简图,其中,框线内为靶点序列,下划线序列为BamHI识别酶切位点,其两端为与载体互补的粘性末端;Figure 3 is a schematic structural diagram of the rubber tree transient transformation editing vector proHbU6.6-sgRNA-163Cas9M, wherein the target sequence is in the frame, the underlined sequence is the BamHI recognition enzyme cleavage site, and its two ends are the cohesive ends complementary to the vector;

图4为橡胶树原生质体基因组靶基因片段PCR产物再酶切(PCR/RE)鉴定结果;其中,1:橡胶树原生质体DNA靶基因片段PCR产物;2:转化对照163Cas9M载体的原生质体DNA靶基因片段PCR产物再BamHI酶切;3:转proHbU6.6-sgRNA-163Cas9M载体的原生质体DNA靶基因片段PCR产物再BamHI酶切;未被编辑的靶基因片段被BamHI酶切为500bp和331bp小片段,基因编辑突变后的靶基因片段为箭头处不能被酶切的条带;Figure 4 is the identification result of PCR product re-enzyme digestion (PCR/RE) of the target gene fragment of rubber tree protoplast genome; wherein, 1: PCR product of rubber tree protoplast DNA target gene fragment; 2: protoplast DNA target gene fragment transformed into control 163Cas9M vector The PCR product was then digested with BamHI; 3: The PCR product of the protoplast DNA target gene fragment of proHbU6.6-sgRNA-163Cas9M vector was digested with BamHI; the unedited target gene fragment was digested into 500bp and 331bp small fragments by BamHI, The target gene fragment after gene editing mutation is the band at the arrow that cannot be cut by enzyme;

图5为部分TA克隆后重组克隆中靶基因片段的酶切验证结果图,可筛选得到靶位点突变而不能被BamHI酶切的靶基因片段重组载体单克隆;Figure 5 is a graph showing the result of enzyme digestion verification of the target gene fragment in the recombinant clone after partial TA cloning. The single clone of the target gene fragment recombinant vector that cannot be digested by BamHI can be obtained by screening the target gene fragment;

图6为靶位点编辑结果序列比对分析;可见,被编辑后的靶位点测序后与野生型比对发现主要的突变类型为单碱基的缺失,其中,也出现了单碱基的插入和小片段的缺失。。Figure 6 shows the sequence alignment analysis of the editing result of the target site; it can be seen that the edited target site is sequenced and compared with the wild type, and the main mutation type is single-base deletion, among which, single-base deletions also appear. Insertions and deletions of small fragments. .

具体实施方式Detailed ways

本发明下述实施例中,如无特别说明,均为常规方法。下述实施例中的载体SK-5G和瞬时转化载体163Cas9M由中国水稻所王克剑课题组惠赠(王克剑,王春,沈兰等,植物多基因敲除载体的构建及应用),该生物材料只为重复本发明的相关实验所用,不可作为其他用途使用。In the following examples of the present invention, unless otherwise specified, they are all conventional methods. The carrier SK-5G in the following embodiment and the transient transformation vector 163Cas9M are donated by the Wang Kejian research group of China Rice Research Institute (Wang Kejian, Wang Chun, Shen Lan, etc., the construction and application of the plant multigene knockout vector), and this biological material is only for It is used to repeat the relevant experiments of the present invention and cannot be used for other purposes.

实施例1巴西橡胶树U6基因启动子proHbU6.6的获得The acquisition of embodiment 1 Hevea brasiliensis U6 gene promoter proHbU6.6

以拟南芥AtU6-26基因(Genebank登录号:X52528.1)和棉花GhU6-9基因(Genebank登录号:XR_001680717.1)的DNA序列为参考,搜索我们建立的橡胶树基因组数据库(hevea.catas.cn),通过同源比对的方式找到一个橡胶树HbU6基因(Genebank登录号:XR_002491077.1),获得此基因上游参考序列。With reference to the DNA sequences of the Arabidopsis AtU6-26 gene (Genebank accession number: X52528.1) and cotton GhU6-9 gene (Genebank accession number: XR_001680717.1), we searched the rubber tree genome database (hevea.catas. cn), found a rubber tree HbU6 gene (Genebank accession number: XR_002491077.1) by homologous alignment, and obtained the upstream reference sequence of this gene.

以巴西橡胶树热研7-33-97(中国热带农业科学院橡胶研究所培育)叶片基因组DNA为模板,设计如下proHbU6.6-F和proHbU6.6-R特异引物,以克隆该启动子区462bp DNA片段:The following specific primers for proHbU6.6-F and proHbU6.6-R were designed to clone the 462bp DNA in the promoter region using the genomic DNA of the leaves of Hexa brasiliensis Reyan 7-33-97 (cultivated by the Rubber Research Institute of the Chinese Academy of Tropical Agricultural Sciences) as the template. Fragment:

proHbU6.6-F:ATCTAACATTGTCTTGCTTC;proHbU6.6-F: ATCTAACATTGTCTTGCTTC;

proHbU6.6-R:CGGTTGCTCAATGCTTCGTG;proHbU6.6-R:CGGTTGCTCAATGCTTCGTG;

使用KOD FX酶(TOYOBO)在20μl反应体系中进行PCR扩增,具体反应程序为:95℃预变性2min,98℃变性10s,59℃退火30s,72℃延伸1min,35个循环,72℃终延伸5min。PCR amplification was performed using KOD FX enzyme (TOYOBO) in a 20 μl reaction system. The specific reaction procedure was: 95°C pre-denaturation for 2 min, 98°C denaturation for 10s, 59°C annealing for 30s, 72°C extension for 1 min, 35 cycles, and 72°C final Extend 5min.

将扩增产物TA克隆到pMD19-T载体上,转化大肠杆菌Dh5α中并挑取重组载体单克隆PCR电泳验证后测序,电泳结果如图2所示。最后,获得462bp如SEQ ID No:1所示的橡胶树U6基因启动子DNA片段proHbU6.6。The amplified product TA was cloned into the pMD19-T vector, transformed into Escherichia coli Dh5α, and the recombinant vector was picked for single clone PCR electrophoresis to verify and sequenced. The electrophoresis results are shown in Figure 2. Finally, the 462bp DNA fragment proHbU6.6 of the rubber tree U6 gene promoter shown in SEQ ID No: 1 was obtained.

使用Vector NTI align X(Invitrogen)将该启动子序列与拟南芥AtU6-26和棉花GhU6-9及其启动子的碱基序列比对分析,发现该启动子序列同样含有U6 snRNA转录的关键位点TATA box及USE(upstream sequence element)元件(如图1所示),并且这两个元件相对于转录起始位点的位置也与AtU6-26和棉花GhU6-9的启动子序列基本一致,这对于几何对称的RNA聚合酶的结合具有重要作用(Kim and Nam,(2013)plant mol.Bio.Rep.31:581-593)。Using Vector NTI align X (Invitrogen), the promoter sequence was compared with the base sequences of Arabidopsis AtU6-26 and cotton GhU6-9 and their promoters, and it was found that the promoter sequence also contained the key position of U6 snRNA transcription. TATA box and USE (upstream sequence element) elements (as shown in Figure 1), and the positions of these two elements relative to the transcription start site are also basically the same as the promoter sequences of AtU6-26 and cotton GhU6-9, This is important for the binding of geometrically symmetrical RNA polymerases (Kim and Nam, (2013) plant mol. Bio. Rep. 31:581-593).

实施例2橡胶树基因编辑载体的构建Example 2 Construction of rubber tree gene editing vector

(1)proHbU6.6构建到中间载体SK-5G载体上(1) Construction of proHbU6.6 on the intermediate vector SK-5G vector

用SalI和XhoI双酶切SK-5G载体和下游gRNA片段,去掉该载体上的水稻U3启动子,回收2913bp载体骨架片段,设计引物:The SK-5G vector and downstream gRNA fragments were digested with SalI and XhoI double enzymes, the rice U3 promoter on the vector was removed, the 2913bp vector backbone fragment was recovered, and primers were designed:

proHbU6.6-lF:proHbU6.6-lF:

GCGGCCGCAGATCTGCTAGCGTCGACATCTAACATTGTCTTGCTTC; GCGGCCGCAGATCTGCTAGCGTCGAC ATCTAACATTGTCTTGCTTC;

proHbU6.6-lR:proHbU6.6-lR:

GGTGTTGTGTTCACCTGCGAGCCGGTTGCTCAATGCTTCGTG; GGTGTTGTGTTCACCTGCGAGCCGGTTGCTCAATGCTTCGTG ;

(下划线所示为与SK-5G载体同源序列)。(underlined sequence homologous to SK-5G vector).

以橡胶树基因组DNA为模板,使用KOD FX酶(TOYOBO)在20μl反应体系中95℃预变性2min,98℃变性10s,60℃退火30s,72℃延伸1min,35个循环,72℃终延伸5min扩增得到proHbU6.6启动子片段,并在其两端引入了SK-5G载体同源序列。Using the rubber tree genomic DNA as the template, KOD FX enzyme (TOYOBO) was used in a 20 μl reaction system for pre-denaturation at 95 °C for 2 min, denaturation at 98 °C for 10 s, annealing at 60 °C for 30 s, extension at 72 °C for 1 min, 35 cycles, and final extension at 72 °C for 5 min. The proHbU6.6 promoter fragment was added, and the homologous sequences of SK-5G vector were introduced at both ends.

设计引物:Design primers:

gRNA-sF:GCTCGCAGGTGAACACAACACC;gRNA-sF: GCTCGCAGGTGAACACAACACC;

gRNA-sR:TTGGGTACCGAGGATCCTCTAGA;gRNA-sR: TTGGGTACCGAGGATCCTCTAGA;

以SK-5G载体质粒为模板,使用KOD FX酶(TOYOBO)在20μl反应体系中95℃预变性2min,98℃变性10s,60℃退火30s,72℃延伸1min,35个循环,72℃终延伸5min扩增得到gRNA片段。Using the SK-5G vector plasmid as a template, KOD FX enzyme (TOYOBO) was used in a 20 μl reaction system for pre-denaturation at 95 °C for 2 min, denaturation at 98 °C for 10 s, annealing at 60 °C for 30 s, extension at 72 °C for 1 min, 35 cycles, and final extension at 72 °C 5min amplification to obtain gRNA fragments.

使用Gibson assembly Cloning Kit(NEB),参照说明书,将得到的同源序列proHbU6.6启动子片段和gRNA片段组装到SK-5G载体上得到proHbU6.6-SK-5G。Using Gibson assembly Cloning Kit (NEB), referring to the instructions, the obtained homologous sequence proHbU6.6 promoter fragment and gRNA fragment were assembled into SK-5G vector to obtain proHbU6.6-SK-5G.

(2)靶位点构建到proHbU6.6-SK-5G载体上(2) Construction of the target site into the proHbU6.6-SK-5G vector

为了验证proHbU6.6启动子的功能活性,选择橡胶树开花调控基因HbTFL1-3作为CRISRP/Cas9编辑的目标基因,在该基因上选择合适靶位点GCCCAGCATAGGGATCCAC,该位点在PAM位点AGG上游2个碱基位置包含BamHI识别位点GGATCC(下划线部分),可用于靶位点被编辑之后的酶切鉴定。In order to verify the functional activity of the proHbU6.6 promoter, the rubber tree flowering regulatory gene HbTFL1-3 was selected as the target gene for CRISRP/Cas9 editing, and the appropriate target site GCCCAGCATAG GGATCC AC was selected on this gene, which is upstream of the PAM site AGG The 2 base positions contain the BamHI recognition site GGATCC (underlined), which can be used for restriction enzyme identification after the target site is edited.

合成靶位点序列如下:The synthetic target site sequence is as follows:

正向:ACCGGCCCAGCATAGGGATCCAC;Forward: ACCG GCCCAGCATAGGGATCCAC;

反向:AAACGTGGATCCCTATGCTGGGC,下划线所示为5’-ACCG和3’-CAAA两个粘性末端。Reverse: AAAC GTGGATCCCTATGCTGGGC, two sticky ends of 5'-ACCG and 3'-CAAA are underlined.

用AarI酶切proHbU6.6-SK-5G载体后在proHbU6.6启动子下游形成3’-TGGC和5’-GTTT两个粘性末端。同时,分别取10μl浓度为100μM的正向和反向靶点序列混匀,于100℃处理5min后室温退火形成带有与proHbU6.6-SK-5G载体互补粘性末端的靶位点双链DNA片段。然后使用T4 DNA连接酶(NEB)将该片段连接到proHbU6.6-SK-5G载体proHbU6.6启动子下游位置得到完整sgRNA表达框(结果如图3所示)。After the proHbU6.6-SK-5G vector was digested with AarI, two sticky ends of 3'-TGGC and 5'-GTTT were formed downstream of the proHbU6.6 promoter. At the same time, 10 μl of the forward and reverse target sequences at a concentration of 100 μM were mixed, and treated at 100 °C for 5 min, and then annealed at room temperature to form a target site double-stranded DNA with cohesive ends complementary to the proHbU6.6-SK-5G vector. Fragment. Then, T4 DNA ligase (NEB) was used to ligate the fragment into the proHbU6.6-SK-5G vector at the downstream position of the proHbU6.6 promoter to obtain a complete sgRNA expression cassette (the results are shown in Figure 3).

(3)sgRNA表达框构建到瞬时转化CRISRP/Cas9基因编辑载体163Cas9M上(3) Construction of sgRNA expression cassette into transient transformation CRISRP/Cas9 gene editing vector 163Cas9M

用KpnI和BglII双酶切proHbU6.6-sgRNA-SK-5G载体,回收625bp的小片段proHbU6.6-sgRNA表达框;The proHbU6.6-sgRNA-SK-5G vector was digested with KpnI and BglII, and the 625bp small fragment proHbU6.6-sgRNA expression cassette was recovered;

用KpnI和BamHI双酶切163Cas9M载体,回收7919bp大片段;The 163Cas9M vector was double digested with KpnI and BamHI, and a large fragment of 7919bp was recovered;

根据BamHI和BglII酶切后产生相同粘性末端的特点,使用T4 DNA连接酶(NEB)将小片段sgRNA表达框构建到163Cas9M载体上得到橡胶树瞬时转化编辑载体proHbU6.6-sgRNA-163Cas9M(构建结果如图3所示)。According to the characteristics of the same sticky ends produced by BamHI and BglII digestion, T4 DNA ligase (NEB) was used to construct the small fragment sgRNA expression cassette into the 163Cas9M vector to obtain the rubber tree transient transformation editing vector proHbU6.6-sgRNA-163Cas9M (the construction results are as follows: shown in Figure 3).

实施例3橡胶树原生质体转化Example 3 Rubber tree protoplast transformation

本实施例以PEG介导编辑载体proHbU6.6-sgRNA-163Cas9M转化橡胶树原生质体,并以不含sgRNA表达框的163Cas9M载体作为对照。In this example, the PEG-mediated editing vector proHbU6.6-sgRNA-163Cas9M was used to transform rubber tree protoplasts, and the 163Cas9M vector without the sgRNA expression cassette was used as a control.

将培育一个月的橡胶树热研7-33-97组培苗转到26-28℃黑暗条件下培养5-7天,取2g变色期叶片立即于0.6M甘露醇溶液中浸泡10min后用于制备原生质体。原生质体的制备和的转化过程参照(Yoo,S.D.等,2007,Nature Protocols,2:1565-1575.)。转化后的原生质体于26-28℃黑暗条件下培养48个小时后用于靶位点突变的检测。Transfer the rubber tree heat research 7-33-97 tissue culture seedlings that have been cultivated for one month to 26-28 ℃ dark conditions for 5-7 days, take 2g of leaves in the discoloration stage and soak them in 0.6M mannitol solution for 10min immediately for preparation Protoplasts. The preparation of protoplasts and the transformation process refer to (Yoo, S.D. et al., 2007, Nature Protocols, 2: 1565-1575.). The transformed protoplasts were cultured in the dark at 26-28°C for 48 hours for detection of target site mutations.

实施例4橡胶树HbTFL1-3靶序列突变位点的检测Example 4 Detection of the mutation site of the HbTFL1-3 target sequence of rubber tree

使用植物基因组DNA提取试剂盒(Tiangen)提取橡胶树原生质体基因组DNA,采用基因组DNA PCR产物进行再酶切(PCR/Restriction Enzyme digestion,PCR/RE)的方法检测HbTFL1-3基因靶位点序列上的突变(Henao-Mejia J等,2016,Cold Spring HarborProtocols,2016(2):pdb.prot090704.)。The plant genomic DNA extraction kit (Tiangen) was used to extract the genomic DNA of rubber tree protoplasts, and the PCR/Restriction Enzyme digestion (PCR/RE) method of genomic DNA was used to detect the target site sequence of HbTFL1-3 gene. Mutation (Henao-Mejia J et al., 2016, Cold Spring Harbor Protocols, 2016(2): pdb.prot090704.).

设计所述靶基因片段PCR扩增引物:Design the PCR amplification primers for the target gene fragment:

HbTFL1-3-F:CACCTAGGGCATAACTTCTAC,HbTFL1-3-F: CACCTAGGGCATAACTTCTAC,

HbTFL1-3-R:ACGGGATCTTAGTTGGATGG,HbTFL1-3-R:ACGGGATCTTAGTTGGATGG,

以橡胶树原生质体基因组DNA为模板,反应程序为:95℃预变性2min,98℃变性10s,59℃退火30s,72℃延伸1min,35个循环,72℃终延伸5min,PCR扩增得到包含编辑位点在内的831bpHbTFL1-3靶基因片段。Using rubber tree protoplast genomic DNA as the template, the reaction program is: 95°C pre-denaturation for 2 min, 98°C denaturation for 10s, 59°C annealing for 30s, 72°C extension for 1 min, 35 cycles, 72°C final extension for 5 min, PCR amplification to obtain the edited The 831bpHbTFL1-3 target gene fragment within the site.

因为靶基因编辑位点包含一个BamHI限制性内切酶识别位点,通过对回收的HbTFL1-3基因片段进行BamHI酶切来检测靶位点的编辑。结果如图4所示,部分靶基因片段因为BamHI识别位点发生突变而不再被BamHI识别并酶切,这初步表明靶基因已成功被编辑,而未被编辑的靶基因片段则被酶切为500bp和331bp的两个小片段。为排除酶切不彻底而残留的部分未编辑靶基因片段的影响,回收PCR产物中不能被酶切的片段,将其TA克隆到pMD-19T(TAKARA)载体上,转化大肠杆菌Dh5α后,再次对重组载体单克隆上靶基因片段进行BamHI酶切验证,结果如图5所示;取不能被酶切的单克隆进行DNA测序,通过序列比对分析橡胶树HbTFL1-3靶位点序列的突变,证实了在橡胶树原生质体细胞内的编辑结果。结果如图6所示。Because the target gene editing site contains a BamHI restriction endonuclease recognition site, the editing of the target site was detected by BamHI digestion of the recovered HbTFL1-3 gene fragment. The results are shown in Figure 4. Some target gene fragments are no longer recognized and digested by BamHI due to the mutation of the BamHI recognition site, which preliminarily indicates that the target gene has been successfully edited, while the unedited target gene fragments are digested by the enzyme. Two small fragments of 500bp and 331bp. In order to eliminate the influence of some unedited target gene fragments remaining due to incomplete enzyme digestion, the fragments that could not be digested by the PCR products were recovered, TA cloned into the pMD-19T (TAKARA) vector, transformed into Escherichia coli Dh5α, and then again. The target gene fragment on the single clone of the recombinant vector was verified by BamHI digestion, and the results are shown in Figure 5; DNA sequencing was performed on the single clone that could not be cut by the enzyme, and the mutation of the HbTFL1-3 target site sequence of rubber tree was analyzed by sequence comparison. The editing results in rubber tree protoplast cells were confirmed. The results are shown in Figure 6.

可见,本发明在巴西橡胶树中获得橡胶树RNA聚合酶III型启动子proHbU6.6启动子具有转录活性,可驱动下游sgRNA的表达,并首次实现了CRISPR/Cas9介导的橡胶树基因组靶向编辑;而编辑后靶位点克隆测序结果发现突变类型多为单碱基的缺失,其中,也出现了单碱基的插入和小片段的缺失。因此,本发明所述启动子可应用于橡胶树CRISPR/Cas9基因编辑体系,从而实现对橡胶树高效精准的品种改良。It can be seen that the present invention obtains the rubber tree RNA polymerase type III promoter proHbU6.6 promoter in Hevea brasiliensis with transcriptional activity, which can drive the expression of downstream sgRNA, and realizes the targeted editing of the rubber tree genome mediated by CRISPR/Cas9 for the first time; Cloning and sequencing of the target site after editing revealed that most of the mutations were single-base deletions, including single-base insertions and small fragment deletions. Therefore, the promoter of the present invention can be applied to the rubber tree CRISPR/Cas9 gene editing system, thereby realizing efficient and accurate variety improvement of rubber tree.

显然,上述实施例仅仅是为清楚地说明所作的举例,而并非对实施方式的限定。对于所属领域的普通技术人员来说,在上述说明的基础上还可以做出其它不同形式的变化或变动。这里无需也无法对所有的实施方式予以穷举。而由此所引伸出的显而易见的变化或变动仍处于本发明创造的保护范围之中。Obviously, the above-mentioned embodiments are only examples for clear description, and are not intended to limit the implementation manner. For those of ordinary skill in the art, changes or modifications in other different forms can also be made on the basis of the above description. There is no need and cannot be exhaustive of all implementations here. And the obvious changes or changes derived from this are still within the protection scope of the present invention.

序列表sequence listing

<110><110>

<120> 一种橡胶树U6基因启动子proHbU6.6及其克隆与应用<120> A kind of rubber tree U6 gene promoter proHbU6.6 and its cloning and application

<160> 1<160> 1

<170> SIPOSequenceListing 1.0<170> SIPOSequenceListing 1.0

<210> 1<210> 1

<211> 462<211> 462

<212> DNA<212> DNA

<213> proHbU6.6<213> proHbU6.6

<400> 1<400> 1

atctaacatt gtcttgcttc ctttttttct tcttcttttt tttttaattg catgaaaatg 60atctaacatt gtcttgcttc ctttttttct tcttcttttt tttttaattg catgaaaatg 60

cattgcacgg ccaaaggcag attacaaaca agaatacaaa gcttctacat tggcatttct 120cattgcacgg ccaaaggcag attacaaaca agaatacaaa gcttctacat tggcatttct 120

gctaacgatt gaaaaagaaa tttgatccgg aatgtagctc tcgaaaatag ctctatttct 180gctaacgatt gaaaaagaaa tttgatccgg aatgtagctc tcgaaaatag ctctatttct 180

taccttccat atagaccaaa tggttactgt cactatgaat ttgcaattta gaatttacaa 240taccttccat atagaccaaa tggttactgt cactatgaat ttgcaattta gaatttacaa 240

gggcaaatgt ggctaaaatt tgggcctcat gatctaaaat agtaatgggt tgtagtccat 300gggcaaatgt ggctaaaatt tgggcctcat gatctaaaat agtaatgggt tgtagtccat 300

ggagagttta aaagttgctt gcttggtgcg tcctagtcaa tgagctgacg tgtttaaaat 360ggagagttta aaagttgctt gcttggtgcg tcctagtcaa tgagctgacg tgtttaaaat 360

gaatgatgac gcttaatggt tagaagagaa ccacatgccc acatcgccta gttacatgca 420gaatgatgac gcttaatggt tagaagagaa ccacatgccc acatcgccta gttacatgca 420

tttactagac tttatgcctg tccacgaagc attgagcaac cg 462tttactagac tttatgcctg tccacgaagc attgagcaac cg 462

Claims (9)

1.一种橡胶树U6基因启动子proHbU6.6,其特征在于,所述启动子proHbU6.6的DNA核苷酸序列如SEQ ID No:1所示。1. A rubber tree U6 gene promoter proHbU6.6 is characterized in that, the DNA nucleotide sequence of described promoter proHbU6.6 is as shown in SEQ ID No: 1. 2.一种橡胶树瞬时转化编辑载体,其特征在于,含有权利要求1所述的橡胶树U6基因启动子proHbU6.6。2. A rubber tree transient transformation editing vector is characterized in that, contains the rubber tree U6 gene promoter proHbU6.6 of claim 1. 3.根据权利要求2所述的橡胶树瞬时转化编辑载体,其特征在于,所述瞬时转化编辑载体为重组质粒proHbU6.6-sgRNA-163Cas9M。3. The transient transformation editing vector of rubber tree according to claim 2, wherein the transient transformation editing vector is a recombinant plasmid proHbU6.6-sgRNA-163Cas9M. 4.一种克隆权利要求1所述的橡胶树U6基因启动子proHbU6.6的方法,其特征在于,包括如下步骤:4. a method for cloning the described rubber tree U6 gene promoter proHbU6.6 of claim 1, is characterized in that, comprises the steps: (1)以巴西橡胶树热研7-33-97叶片基因组DNA为模板,设计如下特异引物:(1) The following specific primers were designed with the genomic DNA of the Hexa brasiliensis 7-33-97 leaves as the template: proHbU6.6-F:ATCTAACATTGTCTTGCTTC;proHbU6.6-F: ATCTAACATTGTCTTGCTTC; proHbU6.6-R:CGGTTGCTCAATGCTTCGTG;proHbU6.6-R:CGGTTGCTCAATGCTTCGTG; (2)使用KOD FX酶在20μl反应体系中进行PCR扩增;(2) PCR amplification was performed in a 20 μl reaction system using KOD FX enzyme; (3)将扩增产物TA克隆到pMD19-T载体上,转化大肠杆菌Dh5α中并挑重组单克隆测序,即得462bp橡胶树U6基因启动子DNA片段proHbU6.6。(3) The amplified product TA was cloned into the pMD19-T vector, transformed into Escherichia coli Dh5α, and the recombinant single clone was sequenced to obtain a 462 bp rubber tree U6 gene promoter DNA fragment proHbU6.6. 5.根据权利要求4所述的克隆所述的橡胶树U6基因启动子proHbU6.6的方法,其特征在于,所述步骤(2)中,所述PCR扩增步骤的反应程序为:95℃预变性2min,98℃变性10s,59℃退火30s,72℃延伸1min,35个循环,72℃终延伸5min。5. the method for the described rubber tree U6 gene promoter proHbU6.6 of cloning according to claim 4, is characterized in that, in described step (2), the reaction program of described PCR amplification step is: 95 ℃ of preliminary Denaturation for 2 min, denaturation at 98 °C for 10 s, annealing at 59 °C for 30 s, extension at 72 °C for 1 min, 35 cycles, and final extension at 72 °C for 5 min. 6.一种构建权利要求2或3所述的橡胶树瞬时转化编辑载体的方法,其特征在于,包括如下步骤:6. a method for constructing the instant transformation editing carrier of rubber tree described in claim 2 or 3, is characterized in that, comprises the steps: (a)将克隆的启动子proHbU6.6构建到中间载体SK-5G上(a) Construction of the cloned promoter proHbU6.6 into the intermediate vector SK-5G 用SalI和XhoI双酶切SK-5G载体,回收2913bp载体骨架片段,设计如下引物分别在proHbU6.6序列和载体gRNA序列两端引入同源序列,将proHbU6.6和gRNA组装到SK-5G载体上得到proHbU6.6-SK-5G:The SK-5G vector was digested with SalI and XhoI, and the 2913bp vector backbone fragment was recovered. The following primers were designed to introduce homologous sequences at both ends of the proHbU6.6 sequence and the vector gRNA sequence, respectively. ProHbU6.6 and gRNA were assembled into the SK-5G vector Get proHbU6.6-SK-5G on: proHbU6.6-lF:proHbU6.6-lF: GCGGCCGCAGATCTGCTAGCGTCGACATCTAACATTGTCTTGCTTC; GCGGCCGCAGATCTGCTAGCGTCGAC ATCTAACATTGTCTTGCTTC; proHbU6.6-lR:proHbU6.6-lR: GGTGTTGTGTTCACCTGCGAGCCGGTTGCTCAATGCTTCGTG; GGTGTTGTGTTCACCTGCGAGCCGGTTGCTCAATGCTTCGTG ; gRNA-sF:GCTCGCAGGTGAACACAACACC;gRNA-sF: GCTCGCAGGTGAACACAACACC; gRNA-sR:TTGGGTACCGAGGATCCTCTAGA;gRNA-sR: TTGGGTACCGAGGATCCTCTAGA; (b)将靶位点构建到proHbU6.6-SK-5G载体上(b) Construction of the target site into the proHbU6.6-SK-5G vector 在橡胶树HbTFL1-3基因上选择如下靶位点:The following target sites were selected on the rubber tree HbTFL1-3 gene: GCCCAGCATAGGGATCCAC,用AarI酶切proHbU6.6-SK-5G载体后两端形成3’-TGGC和5’-GTTT两个粘性末端;GCCCAGCATAGGGATCCAC, the proHbU6.6-SK-5G vector was digested with AarI to form two sticky ends of 3'-TGGC and 5'-GTTT; 合成靶位点序列,并引入5’-ACCG和3’-CAAA两个粘性末端:Synthesize the target site sequence and introduce two sticky ends, 5'-ACCG and 3'-CAAA: 正向:ACCGGCCCAGCATAGGGATCCAC;Forward: ACCGGCCCCAGCATAGGGATCCAC; 反向:AAACGTGGATCCCTATGCTGGGC;Reverse: AAACGTGGATCCCTATGCTGGGC; 将上述正向和反向靶点序列DNA混匀,100℃处理后进行室温退火,形成带有与proHbU6.6-SK-5G载体互补粘性末端的双链DNA,然后使用T4 DNA连接酶将该片段连接到载体proHbU6.6启动子下游位置得到完整sgRNA表达框;The above-mentioned forward and reverse target sequence DNAs were mixed evenly, treated at 100°C, and then annealed at room temperature to form double-stranded DNA with cohesive ends complementary to the proHbU6.6-SK-5G vector. The fragment is connected to the downstream position of the proHbU6.6 promoter of the vector to obtain a complete sgRNA expression cassette; (c)sgRNA表达框构建到瞬时转化编辑载体163Cas9M上(c) Construction of sgRNA expression cassette into transient transformation editing vector 163Cas9M 用KpnI和BglII双酶切proHbU6.6-sgRNA-SK-5G载体,回收625bp的小片段sgRNA表达框;The proHbU6.6-sgRNA-SK-5G vector was digested with KpnI and BglII, and a small fragment of 625bp sgRNA expression cassette was recovered; 用KpnI和BamHI双酶切163Cas9M载体,回收7919bp大片段;The 163Cas9M vector was double digested with KpnI and BamHI, and a large fragment of 7919bp was recovered; 使用T4 DNA连接酶将小片段sgRNA表达框构建到163Cas9M载体上得到橡胶树瞬时转化编辑载体proHbU6.6-sgRNA-163Cas9M,即得。Use T4 DNA ligase to construct the small fragment sgRNA expression cassette into the 163Cas9M vector to obtain the rubber tree transient transformation editing vector proHbU6.6-sgRNA-163Cas9M. 7.一种对橡胶树进行基因组编辑的方法,其特征在于,包括将权利要求2或3所述的橡胶树瞬时转化编辑载体导入橡胶树原生质体的步骤。7. A method for genome editing of rubber tree, characterized by comprising the step of introducing the rubber tree transient transformation editing vector described in claim 2 or 3 into rubber tree protoplasts. 8.权利要求1所述的橡胶树U6基因启动子proHbU6.6在橡胶树分子育种技术领域中的应用。8. The application of the rubber tree U6 gene promoter proHbU6.6 of claim 1 in the technical field of rubber tree molecular breeding. 9.权利要求2或3所述的橡胶树瞬时转化编辑载体在橡胶树分子育种技术领域中的应用。9. The application of the instantaneous transformation editing vector of rubber tree described in claim 2 or 3 in the technical field of rubber tree molecular breeding.
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