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Commits on Feb 24, 2025

• updating vcfasm

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Commits on Dec 11, 2024

• Catch exception when there are no short variations between the genomes.

  

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Commits on Oct 28, 2024

• Add template for PR

  

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• Add template for PR

  

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• update test

  

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• add badge

  

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• Adding issue template

  

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Commits on Oct 16, 2024

• Added pysam as a dependency

  

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• Corrected file type

  

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• Adding test data

  

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Commits on Oct 14, 2024

• change np.int_t to np.int64_t

  

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• Allow python 3.11

  

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• Adding github workflow

  

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Commits on Sep 9, 2024

• clean up

  

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• updated and cleaned

  

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• updated

  

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• merged

  

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• Merging chroder within syri to automatically work with genomes of different karyotypes

  

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Commits on Sep 6, 2024

• Update README.md

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• Updated README to include nf-plotsv

  

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Commits on Jun 5, 2024

• Merge pull request #253

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Commits on Jun 4, 2024

• Update python-igraph dependency to igraph

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Commits on May 21, 2024

• Fixed typos

  

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• Changing conda recipe to use `pip install` and not setuptools

  

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Commits on Feb 22, 2024

• merged selective contents from https://github.com/schneebergerlab/syri/pull/217

  

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• clean

  

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• tmp

  

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Commits on Feb 20, 2024

• Merge pull request #237 from mparker2/master

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• calc chr_sizes from fasta

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Commits on Feb 19, 2024

• Merge pull request #234 from mbhall88/patch-1

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Commits on Feb 7, 2024

• add contig sizes to VCF

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Commits on Jan 18, 2024

• add missing sys import

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Commits on Dec 7, 2023

• Update README

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Commits on May 30, 2023

• Fixed typo in error message.

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Commits on May 22, 2023

• Added more descriptive warning messages. Remove scipy import. Removed pandas warnings.

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